Experiment: MoYLS4 with Lomefloxacin 0.00078 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0715 and DvMF_0716 overlap by 11 nucleotides DvMF_0716 and DvMF_0717 are separated by 1 nucleotides DvMF_0717 and DvMF_0718 are separated by 90 nucleotides DvMF_0718 and DvMF_0719 are separated by 2 nucleotides DvMF_0719 and DvMF_0720 overlap by 14 nucleotides DvMF_0720 and DvMF_0721 overlap by 4 nucleotides
DvMF_0715: DvMF_0715 - hypothetical protein (RefSeq), at 868,823 to 869,416
_0715
DvMF_0716: DvMF_0716 - regulatory protein, LacI (RefSeq), at 869,406 to 869,735
_0716
DvMF_0717: DvMF_0717 - hypothetical protein (RefSeq), at 869,737 to 870,231
_0717
DvMF_0718: DvMF_0718 - hypothetical protein (RefSeq), at 870,322 to 870,774
_0718
DvMF_0719: DvMF_0719 - hypothetical protein (RefSeq), at 870,777 to 871,001
_0719
DvMF_0720: DvMF_0720 - protein of unknown function DUF1018 (RefSeq), at 870,988 to 871,428
_0720
DvMF_0721: DvMF_0721 - Mor transcription activator domain protein (RefSeq), at 871,425 to 871,895
_0721
Position (kb) 870
871 Strain fitness (log2 ratio) -1
0
1 at 869.322 kb on - strand, within DvMF_0715 at 870.104 kb on - strand, within DvMF_0717 at 870.127 kb on - strand, within DvMF_0717 at 870.394 kb on - strand, within DvMF_0718 at 870.652 kb on - strand, within DvMF_0718 at 870.772 kb on - strand at 870.794 kb on + strand at 871.108 kb on + strand, within DvMF_0720 at 871.185 kb on + strand, within DvMF_0720 at 871.190 kb on + strand, within DvMF_0720 at 871.619 kb on + strand, within DvMF_0721
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00078 mM remove 869,322 - DvMF_0715 0.84 -1.0 870,104 - DvMF_0717 0.74 +1.1 870,127 - DvMF_0717 0.79 +0.3 870,394 - DvMF_0718 0.16 +1.0 870,652 - DvMF_0718 0.73 +0.6 870,772 - +1.4 870,794 + -0.2 871,108 + DvMF_0720 0.27 -0.1 871,185 + DvMF_0720 0.45 +0.1 871,190 + DvMF_0720 0.46 +1.4 871,619 + DvMF_0721 0.41 +1.5
Or see this region's nucleotide sequence