Experiment: MoYLS4 with Lomefloxacin 0.00078 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0211 and DvMF_0212 are separated by 92 nucleotides DvMF_0212 and DvMF_0213 are separated by 433 nucleotides
DvMF_0211: DvMF_0211 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 232,341 to 235,571
_0211
DvMF_0212: DvMF_0212 - hypothetical protein (RefSeq), at 235,664 to 239,317
_0212
DvMF_0213: DvMF_0213 - multi-sensor signal transduction histidine kinase (RefSeq), at 239,751 to 241,919
_0213
Position (kb) 235
236
237
238
239
240 Strain fitness (log2 ratio) -1
0
1 at 234.681 kb on + strand, within DvMF_0211 at 234.681 kb on + strand, within DvMF_0211 at 234.681 kb on + strand, within DvMF_0211 at 234.681 kb on + strand, within DvMF_0211 at 234.689 kb on - strand, within DvMF_0211 at 234.689 kb on - strand, within DvMF_0211 at 234.867 kb on - strand, within DvMF_0211 at 235.074 kb on + strand, within DvMF_0211 at 235.738 kb on - strand at 236.314 kb on - strand, within DvMF_0212 at 236.466 kb on + strand, within DvMF_0212 at 236.519 kb on + strand, within DvMF_0212 at 236.564 kb on + strand, within DvMF_0212 at 236.677 kb on + strand, within DvMF_0212 at 236.868 kb on + strand, within DvMF_0212 at 237.259 kb on + strand, within DvMF_0212 at 237.331 kb on - strand, within DvMF_0212 at 237.409 kb on + strand, within DvMF_0212 at 237.524 kb on + strand, within DvMF_0212 at 238.400 kb on - strand, within DvMF_0212 at 238.421 kb on - strand, within DvMF_0212 at 238.549 kb on - strand, within DvMF_0212 at 238.760 kb on + strand, within DvMF_0212 at 238.908 kb on + strand, within DvMF_0212 at 238.926 kb on - strand, within DvMF_0212 at 239.034 kb on - strand at 239.039 kb on - strand at 239.777 kb on + strand at 239.884 kb on + strand at 239.970 kb on - strand, within DvMF_0213 at 240.099 kb on + strand, within DvMF_0213 at 240.243 kb on - strand, within DvMF_0213 at 240.263 kb on - strand, within DvMF_0213 at 240.309 kb on - strand, within DvMF_0213
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00078 mM remove 234,681 + DvMF_0211 0.72 -0.5 234,681 + DvMF_0211 0.72 -0.3 234,681 + DvMF_0211 0.72 -0.7 234,681 + DvMF_0211 0.72 -0.2 234,689 - DvMF_0211 0.73 -0.6 234,689 - DvMF_0211 0.73 +0.0 234,867 - DvMF_0211 0.78 -1.1 235,074 + DvMF_0211 0.85 -0.4 235,738 - -0.4 236,314 - DvMF_0212 0.18 +0.3 236,466 + DvMF_0212 0.22 +0.3 236,519 + DvMF_0212 0.23 +0.0 236,564 + DvMF_0212 0.25 -0.3 236,677 + DvMF_0212 0.28 -0.3 236,868 + DvMF_0212 0.33 -0.9 237,259 + DvMF_0212 0.44 -0.8 237,331 - DvMF_0212 0.46 -0.5 237,409 + DvMF_0212 0.48 -0.1 237,524 + DvMF_0212 0.51 -0.2 238,400 - DvMF_0212 0.75 -0.3 238,421 - DvMF_0212 0.75 -0.4 238,549 - DvMF_0212 0.79 -0.1 238,760 + DvMF_0212 0.85 -0.2 238,908 + DvMF_0212 0.89 -0.5 238,926 - DvMF_0212 0.89 -0.2 239,034 - -0.2 239,039 - -0.8 239,777 + +0.6 239,884 + +0.2 239,970 - DvMF_0213 0.10 -0.6 240,099 + DvMF_0213 0.16 -0.7 240,243 - DvMF_0213 0.23 -0.4 240,263 - DvMF_0213 0.24 -0.3 240,309 - DvMF_0213 0.26 -0.0
Or see this region's nucleotide sequence