Experiment: MoYLS4 with Lomefloxacin 0.00078 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0147 and DvMF_0148 are separated by 204 nucleotides DvMF_0148 and DvMF_0149 are separated by 242 nucleotides DvMF_0149 and DvMF_0150 are separated by 9 nucleotides
DvMF_0147: DvMF_0147 - hypothetical protein (RefSeq), at 163,646 to 164,674
_0147
DvMF_0148: DvMF_0148 - HAD-superfamily hydrolase, subfamily IA, variant 1 (RefSeq), at 164,879 to 165,622
_0148
DvMF_0149: DvMF_0149 - protein of unknown function YGGT (RefSeq), at 165,865 to 166,167
_0149
DvMF_0150: DvMF_0150 - DivIVA family protein (RefSeq), at 166,177 to 166,686
_0150
Position (kb) 164
165
166 Strain fitness (log2 ratio) -1
0
1 at 163.900 kb on + strand, within DvMF_0147 at 163.942 kb on - strand, within DvMF_0147 at 164.022 kb on - strand, within DvMF_0147 at 164.037 kb on - strand, within DvMF_0147 at 164.048 kb on - strand, within DvMF_0147 at 164.187 kb on + strand, within DvMF_0147 at 164.483 kb on + strand, within DvMF_0147 at 164.550 kb on + strand, within DvMF_0147 at 164.558 kb on - strand, within DvMF_0147 at 164.604 kb on - strand at 164.891 kb on - strand at 165.184 kb on + strand, within DvMF_0148 at 165.333 kb on - strand, within DvMF_0148 at 165.333 kb on - strand, within DvMF_0148 at 165.374 kb on - strand, within DvMF_0148 at 165.386 kb on + strand, within DvMF_0148 at 165.499 kb on + strand, within DvMF_0148 at 165.743 kb on + strand at 165.743 kb on + strand at 165.743 kb on + strand at 166.078 kb on - strand, within DvMF_0149 at 166.249 kb on - strand, within DvMF_0150 at 166.452 kb on - strand, within DvMF_0150 at 166.500 kb on + strand, within DvMF_0150
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00078 mM remove 163,900 + DvMF_0147 0.25 -0.1 163,942 - DvMF_0147 0.29 -0.6 164,022 - DvMF_0147 0.37 -0.6 164,037 - DvMF_0147 0.38 -0.0 164,048 - DvMF_0147 0.39 -0.4 164,187 + DvMF_0147 0.53 -0.4 164,483 + DvMF_0147 0.81 -0.2 164,550 + DvMF_0147 0.88 -0.9 164,558 - DvMF_0147 0.89 +0.1 164,604 - -0.1 164,891 - -0.4 165,184 + DvMF_0148 0.41 -0.8 165,333 - DvMF_0148 0.61 +0.1 165,333 - DvMF_0148 0.61 -0.1 165,374 - DvMF_0148 0.67 -0.4 165,386 + DvMF_0148 0.68 -0.3 165,499 + DvMF_0148 0.83 -0.4 165,743 + -0.2 165,743 + -0.1 165,743 + -0.3 166,078 - DvMF_0149 0.70 +0.3 166,249 - DvMF_0150 0.14 -0.2 166,452 - DvMF_0150 0.54 +0.5 166,500 + DvMF_0150 0.63 -0.0
Or see this region's nucleotide sequence