Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5975 and Pf6N2E2_5976 are separated by 19 nucleotides Pf6N2E2_5976 and Pf6N2E2_5977 are separated by 49 nucleotides
Pf6N2E2_5975 - 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58), at 6,792,653 to 6,793,633
_5975
Pf6N2E2_5976 - 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21), at 6,793,653 to 6,794,273
_5976
Pf6N2E2_5977 - Galactonate dehydratase (EC 4.2.1.6), at 6,794,323 to 6,795,471
_5977
Position (kb)
6793
6794
6795 Strain fitness (log2 ratio)
-2
-1
0
1 at 6792.705 kb on - strand at 6792.927 kb on - strand, within Pf6N2E2_5975 at 6792.969 kb on + strand, within Pf6N2E2_5975 at 6792.969 kb on + strand, within Pf6N2E2_5975 at 6792.970 kb on - strand, within Pf6N2E2_5975 at 6793.249 kb on + strand, within Pf6N2E2_5975 at 6793.249 kb on + strand, within Pf6N2E2_5975 at 6793.250 kb on - strand, within Pf6N2E2_5975 at 6793.250 kb on - strand, within Pf6N2E2_5975 at 6793.391 kb on + strand, within Pf6N2E2_5975 at 6793.744 kb on - strand, within Pf6N2E2_5976 at 6793.965 kb on + strand, within Pf6N2E2_5976 at 6793.965 kb on + strand, within Pf6N2E2_5976 at 6793.966 kb on - strand, within Pf6N2E2_5976 at 6794.029 kb on + strand, within Pf6N2E2_5976 at 6794.029 kb on + strand, within Pf6N2E2_5976 at 6794.029 kb on + strand, within Pf6N2E2_5976 at 6794.030 kb on - strand, within Pf6N2E2_5976 at 6794.030 kb on - strand, within Pf6N2E2_5976 at 6794.030 kb on - strand, within Pf6N2E2_5976 at 6794.030 kb on - strand, within Pf6N2E2_5976 at 6794.030 kb on - strand, within Pf6N2E2_5976 at 6794.130 kb on - strand, within Pf6N2E2_5976 at 6794.244 kb on + strand at 6794.244 kb on + strand at 6794.349 kb on + strand at 6794.473 kb on + strand, within Pf6N2E2_5977 at 6794.671 kb on + strand, within Pf6N2E2_5977 at 6794.671 kb on + strand, within Pf6N2E2_5977 at 6794.672 kb on - strand, within Pf6N2E2_5977 at 6794.672 kb on - strand, within Pf6N2E2_5977 at 6794.930 kb on - strand, within Pf6N2E2_5977 at 6794.930 kb on - strand, within Pf6N2E2_5977 at 6794.971 kb on + strand, within Pf6N2E2_5977 at 6795.073 kb on + strand, within Pf6N2E2_5977 at 6795.154 kb on + strand, within Pf6N2E2_5977 at 6795.232 kb on + strand, within Pf6N2E2_5977 at 6795.233 kb on - strand, within Pf6N2E2_5977 at 6795.233 kb on - strand, within Pf6N2E2_5977 at 6795.233 kb on - strand, within Pf6N2E2_5977 at 6795.271 kb on + strand, within Pf6N2E2_5977 at 6795.271 kb on + strand, within Pf6N2E2_5977 at 6795.271 kb on + strand, within Pf6N2E2_5977 at 6795.272 kb on - strand, within Pf6N2E2_5977 at 6795.272 kb on - strand, within Pf6N2E2_5977
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 6,792,705 - -2.4 6,792,927 - Pf6N2E2_5975 0.28 -0.3 6,792,969 + Pf6N2E2_5975 0.32 -0.1 6,792,969 + Pf6N2E2_5975 0.32 +0.3 6,792,970 - Pf6N2E2_5975 0.32 +0.0 6,793,249 + Pf6N2E2_5975 0.61 +0.2 6,793,249 + Pf6N2E2_5975 0.61 -0.4 6,793,250 - Pf6N2E2_5975 0.61 -1.0 6,793,250 - Pf6N2E2_5975 0.61 -0.3 6,793,391 + Pf6N2E2_5975 0.75 +0.7 6,793,744 - Pf6N2E2_5976 0.15 -0.3 6,793,965 + Pf6N2E2_5976 0.50 -1.5 6,793,965 + Pf6N2E2_5976 0.50 -0.4 6,793,966 - Pf6N2E2_5976 0.50 -0.2 6,794,029 + Pf6N2E2_5976 0.61 -0.3 6,794,029 + Pf6N2E2_5976 0.61 -1.1 6,794,029 + Pf6N2E2_5976 0.61 -1.0 6,794,030 - Pf6N2E2_5976 0.61 +0.6 6,794,030 - Pf6N2E2_5976 0.61 -1.9 6,794,030 - Pf6N2E2_5976 0.61 +0.2 6,794,030 - Pf6N2E2_5976 0.61 -0.6 6,794,030 - Pf6N2E2_5976 0.61 -0.3 6,794,130 - Pf6N2E2_5976 0.77 -0.5 6,794,244 + -1.0 6,794,244 + -0.3 6,794,349 + -0.1 6,794,473 + Pf6N2E2_5977 0.13 -0.5 6,794,671 + Pf6N2E2_5977 0.30 -0.1 6,794,671 + Pf6N2E2_5977 0.30 -0.4 6,794,672 - Pf6N2E2_5977 0.30 -0.4 6,794,672 - Pf6N2E2_5977 0.30 -0.6 6,794,930 - Pf6N2E2_5977 0.53 +0.9 6,794,930 - Pf6N2E2_5977 0.53 +0.2 6,794,971 + Pf6N2E2_5977 0.56 -0.3 6,795,073 + Pf6N2E2_5977 0.65 +0.8 6,795,154 + Pf6N2E2_5977 0.72 -0.6 6,795,232 + Pf6N2E2_5977 0.79 -1.4 6,795,233 - Pf6N2E2_5977 0.79 -0.2 6,795,233 - Pf6N2E2_5977 0.79 -0.3 6,795,233 - Pf6N2E2_5977 0.79 +0.1 6,795,271 + Pf6N2E2_5977 0.83 -0.9 6,795,271 + Pf6N2E2_5977 0.83 -0.1 6,795,271 + Pf6N2E2_5977 0.83 -0.0 6,795,272 - Pf6N2E2_5977 0.83 +0.0 6,795,272 - Pf6N2E2_5977 0.83 +0.6
Or see this region's nucleotide sequence