Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3 and Pf6N2E2_4 overlap by 1 nucleotides Pf6N2E2_4 and Pf6N2E2_5 are separated by 11 nucleotides
Pf6N2E2_3 - Non-ribosomal peptide synthetase modules, pyoverdine, at 2,014 to 14,454
_3
Pf6N2E2_4 - Non-ribosomal peptide synthetase modules, pyoverdine @ Siderophore biosynthesis non-ribosomal peptide synthetase modules, at 14,454 to 20,954
_4
Pf6N2E2_5 - Non-ribosomal peptide synthetase modules, pyoverdine @ Siderophore biosynthesis non-ribosomal peptide synthetase modules, at 20,966 to 27,997
_5
Position (kb) 14
15
16
17
18
19
20
21 Strain fitness (log2 ratio) -2
-1
0
1
2 at 13.469 kb on - strand at 13.492 kb on + strand at 13.492 kb on + strand at 13.525 kb on + strand at 13.525 kb on + strand at 13.525 kb on + strand at 13.526 kb on - strand at 13.526 kb on - strand at 13.526 kb on - strand at 13.597 kb on + strand at 13.597 kb on + strand at 13.597 kb on + strand at 13.598 kb on - strand at 13.651 kb on + strand at 13.652 kb on - strand at 13.753 kb on + strand at 14.036 kb on + strand at 14.045 kb on - strand at 14.459 kb on + strand at 14.460 kb on - strand at 14.493 kb on - strand at 14.613 kb on + strand at 14.613 kb on + strand at 14.613 kb on + strand at 15.055 kb on - strand at 15.057 kb on + strand at 15.058 kb on - strand at 15.111 kb on + strand, within Pf6N2E2_4 at 15.524 kb on - strand, within Pf6N2E2_4 at 15.765 kb on + strand, within Pf6N2E2_4 at 15.766 kb on - strand, within Pf6N2E2_4 at 15.766 kb on - strand, within Pf6N2E2_4 at 15.766 kb on - strand, within Pf6N2E2_4 at 15.766 kb on - strand, within Pf6N2E2_4 at 15.766 kb on - strand, within Pf6N2E2_4 at 15.801 kb on + strand, within Pf6N2E2_4 at 15.802 kb on - strand, within Pf6N2E2_4 at 15.802 kb on - strand, within Pf6N2E2_4 at 15.896 kb on + strand, within Pf6N2E2_4 at 15.955 kb on - strand, within Pf6N2E2_4 at 16.216 kb on - strand, within Pf6N2E2_4 at 16.216 kb on - strand, within Pf6N2E2_4 at 16.236 kb on + strand, within Pf6N2E2_4 at 16.437 kb on + strand, within Pf6N2E2_4 at 16.437 kb on + strand, within Pf6N2E2_4 at 16.438 kb on - strand, within Pf6N2E2_4 at 16.478 kb on - strand, within Pf6N2E2_4 at 16.628 kb on - strand, within Pf6N2E2_4 at 16.951 kb on - strand, within Pf6N2E2_4 at 17.154 kb on + strand, within Pf6N2E2_4 at 17.154 kb on + strand, within Pf6N2E2_4 at 17.154 kb on + strand, within Pf6N2E2_4 at 17.396 kb on - strand, within Pf6N2E2_4 at 17.404 kb on - strand, within Pf6N2E2_4 at 17.404 kb on - strand, within Pf6N2E2_4 at 17.404 kb on - strand, within Pf6N2E2_4 at 17.440 kb on + strand, within Pf6N2E2_4 at 17.441 kb on - strand, within Pf6N2E2_4 at 17.514 kb on + strand, within Pf6N2E2_4 at 17.954 kb on - strand, within Pf6N2E2_4 at 18.291 kb on + strand, within Pf6N2E2_4 at 18.300 kb on + strand, within Pf6N2E2_4 at 18.300 kb on + strand, within Pf6N2E2_4 at 18.301 kb on - strand, within Pf6N2E2_4 at 18.301 kb on - strand, within Pf6N2E2_4 at 18.565 kb on - strand, within Pf6N2E2_4 at 18.794 kb on + strand, within Pf6N2E2_4 at 18.978 kb on + strand, within Pf6N2E2_4 at 19.193 kb on - strand, within Pf6N2E2_4 at 19.392 kb on + strand, within Pf6N2E2_4 at 19.392 kb on + strand, within Pf6N2E2_4 at 19.392 kb on + strand, within Pf6N2E2_4 at 19.392 kb on + strand, within Pf6N2E2_4 at 19.392 kb on + strand, within Pf6N2E2_4 at 19.393 kb on - strand, within Pf6N2E2_4 at 19.393 kb on - strand, within Pf6N2E2_4 at 19.434 kb on + strand, within Pf6N2E2_4 at 19.434 kb on + strand, within Pf6N2E2_4 at 19.434 kb on + strand, within Pf6N2E2_4 at 19.435 kb on - strand, within Pf6N2E2_4 at 19.552 kb on - strand, within Pf6N2E2_4 at 19.605 kb on + strand, within Pf6N2E2_4 at 19.605 kb on + strand, within Pf6N2E2_4 at 19.605 kb on + strand, within Pf6N2E2_4 at 19.606 kb on - strand, within Pf6N2E2_4 at 19.606 kb on - strand, within Pf6N2E2_4 at 19.614 kb on + strand, within Pf6N2E2_4 at 19.614 kb on + strand, within Pf6N2E2_4 at 19.615 kb on - strand, within Pf6N2E2_4 at 20.028 kb on + strand, within Pf6N2E2_4 at 20.028 kb on + strand, within Pf6N2E2_4 at 20.029 kb on - strand, within Pf6N2E2_4 at 20.029 kb on - strand, within Pf6N2E2_4 at 20.038 kb on - strand, within Pf6N2E2_4 at 20.139 kb on + strand, within Pf6N2E2_4 at 20.139 kb on + strand, within Pf6N2E2_4 at 20.139 kb on + strand, within Pf6N2E2_4 at 20.140 kb on - strand, within Pf6N2E2_4 at 20.140 kb on - strand, within Pf6N2E2_4 at 20.140 kb on - strand, within Pf6N2E2_4 at 20.140 kb on - strand, within Pf6N2E2_4 at 20.140 kb on - strand, within Pf6N2E2_4 at 20.193 kb on + strand, within Pf6N2E2_4 at 20.194 kb on - strand, within Pf6N2E2_4 at 20.479 kb on - strand at 20.479 kb on - strand at 20.581 kb on - strand at 20.581 kb on - strand at 20.581 kb on - strand at 20.581 kb on - strand at 20.581 kb on - strand at 20.692 kb on + strand at 20.692 kb on + strand at 20.693 kb on - strand at 21.210 kb on + strand at 21.417 kb on - strand at 21.536 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 13,469 - +0.7 13,492 + -0.3 13,492 + -0.9 13,525 + +1.2 13,525 + +0.1 13,525 + -0.3 13,526 - +0.7 13,526 - -1.0 13,526 - -0.2 13,597 + +0.0 13,597 + +0.5 13,597 + +0.6 13,598 - -0.6 13,651 + +0.4 13,652 - -0.1 13,753 + -0.7 14,036 + -2.2 14,045 - -1.3 14,459 + -0.3 14,460 - -1.0 14,493 - -1.3 14,613 + +0.7 14,613 + +0.2 14,613 + +0.6 15,055 - +0.5 15,057 + -0.1 15,058 - +0.2 15,111 + Pf6N2E2_4 0.10 -0.1 15,524 - Pf6N2E2_4 0.16 -0.0 15,765 + Pf6N2E2_4 0.20 -0.8 15,766 - Pf6N2E2_4 0.20 -0.0 15,766 - Pf6N2E2_4 0.20 +0.8 15,766 - Pf6N2E2_4 0.20 +0.6 15,766 - Pf6N2E2_4 0.20 +0.5 15,766 - Pf6N2E2_4 0.20 -0.5 15,801 + Pf6N2E2_4 0.21 -0.8 15,802 - Pf6N2E2_4 0.21 -0.2 15,802 - Pf6N2E2_4 0.21 -1.0 15,896 + Pf6N2E2_4 0.22 -0.6 15,955 - Pf6N2E2_4 0.23 +0.4 16,216 - Pf6N2E2_4 0.27 -0.0 16,216 - Pf6N2E2_4 0.27 +0.2 16,236 + Pf6N2E2_4 0.27 +0.4 16,437 + Pf6N2E2_4 0.31 -0.5 16,437 + Pf6N2E2_4 0.31 -0.5 16,438 - Pf6N2E2_4 0.31 -0.2 16,478 - Pf6N2E2_4 0.31 +0.6 16,628 - Pf6N2E2_4 0.33 +0.9 16,951 - Pf6N2E2_4 0.38 +0.2 17,154 + Pf6N2E2_4 0.42 +0.2 17,154 + Pf6N2E2_4 0.42 -0.2 17,154 + Pf6N2E2_4 0.42 +0.1 17,396 - Pf6N2E2_4 0.45 -1.1 17,404 - Pf6N2E2_4 0.45 +0.3 17,404 - Pf6N2E2_4 0.45 +0.5 17,404 - Pf6N2E2_4 0.45 +0.2 17,440 + Pf6N2E2_4 0.46 +1.0 17,441 - Pf6N2E2_4 0.46 +0.1 17,514 + Pf6N2E2_4 0.47 -0.1 17,954 - Pf6N2E2_4 0.54 +0.7 18,291 + Pf6N2E2_4 0.59 -0.2 18,300 + Pf6N2E2_4 0.59 -0.1 18,300 + Pf6N2E2_4 0.59 -0.3 18,301 - Pf6N2E2_4 0.59 +0.1 18,301 - Pf6N2E2_4 0.59 -0.6 18,565 - Pf6N2E2_4 0.63 -0.0 18,794 + Pf6N2E2_4 0.67 +0.5 18,978 + Pf6N2E2_4 0.70 +0.2 19,193 - Pf6N2E2_4 0.73 +0.2 19,392 + Pf6N2E2_4 0.76 -0.1 19,392 + Pf6N2E2_4 0.76 +0.4 19,392 + Pf6N2E2_4 0.76 +0.5 19,392 + Pf6N2E2_4 0.76 -0.2 19,392 + Pf6N2E2_4 0.76 -1.0 19,393 - Pf6N2E2_4 0.76 +0.8 19,393 - Pf6N2E2_4 0.76 +0.2 19,434 + Pf6N2E2_4 0.77 +0.6 19,434 + Pf6N2E2_4 0.77 +0.6 19,434 + Pf6N2E2_4 0.77 -0.2 19,435 - Pf6N2E2_4 0.77 +0.7 19,552 - Pf6N2E2_4 0.78 +0.2 19,605 + Pf6N2E2_4 0.79 +0.7 19,605 + Pf6N2E2_4 0.79 -1.2 19,605 + Pf6N2E2_4 0.79 +0.4 19,606 - Pf6N2E2_4 0.79 -0.2 19,606 - Pf6N2E2_4 0.79 -0.5 19,614 + Pf6N2E2_4 0.79 +0.7 19,614 + Pf6N2E2_4 0.79 +0.8 19,615 - Pf6N2E2_4 0.79 -0.4 20,028 + Pf6N2E2_4 0.86 +0.3 20,028 + Pf6N2E2_4 0.86 +0.6 20,029 - Pf6N2E2_4 0.86 +0.3 20,029 - Pf6N2E2_4 0.86 +0.4 20,038 - Pf6N2E2_4 0.86 +0.3 20,139 + Pf6N2E2_4 0.87 +0.0 20,139 + Pf6N2E2_4 0.87 -0.1 20,139 + Pf6N2E2_4 0.87 -0.1 20,140 - Pf6N2E2_4 0.87 +0.5 20,140 - Pf6N2E2_4 0.87 -0.6 20,140 - Pf6N2E2_4 0.87 -0.2 20,140 - Pf6N2E2_4 0.87 -0.0 20,140 - Pf6N2E2_4 0.87 +1.8 20,193 + Pf6N2E2_4 0.88 +0.3 20,194 - Pf6N2E2_4 0.88 +0.9 20,479 - +0.7 20,479 - -0.6 20,581 - +0.2 20,581 - -0.1 20,581 - -0.9 20,581 - -0.4 20,581 - +0.8 20,692 + -0.4 20,692 + -0.4 20,693 - +1.0 21,210 + +0.4 21,417 - -0.0 21,536 + +0.8
Or see this region's nucleotide sequence