Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3722 and Pf6N2E2_3723 overlap by 14 nucleotides Pf6N2E2_3723 and Pf6N2E2_3724 are separated by 10 nucleotides Pf6N2E2_3724 and Pf6N2E2_3725 overlap by 4 nucleotides
Pf6N2E2_3722 - FIG064705: cation/hydrogen antiporter, at 4,336,136 to 4,337,293
_3722
Pf6N2E2_3723 - FIG022199: FAD-binding protein, at 4,337,280 to 4,338,527
_3723
Pf6N2E2_3724 - FIG025233: SAM-dependent methyltransferases, at 4,338,538 to 4,339,266
_3724
Pf6N2E2_3725 - FIG085779: Lipoprotein, at 4,339,263 to 4,339,745
_3725
Position (kb) 4337
4338
4339 Strain fitness (log2 ratio) -1
0
1
2 at 4336.341 kb on - strand, within Pf6N2E2_3722 at 4336.553 kb on + strand, within Pf6N2E2_3722 at 4336.553 kb on + strand, within Pf6N2E2_3722 at 4336.553 kb on + strand, within Pf6N2E2_3722 at 4336.553 kb on + strand, within Pf6N2E2_3722 at 4336.553 kb on + strand, within Pf6N2E2_3722 at 4336.553 kb on + strand, within Pf6N2E2_3722 at 4336.553 kb on + strand, within Pf6N2E2_3722 at 4336.554 kb on - strand, within Pf6N2E2_3722 at 4336.554 kb on - strand, within Pf6N2E2_3722 at 4336.554 kb on - strand, within Pf6N2E2_3722 at 4336.554 kb on - strand, within Pf6N2E2_3722 at 4336.554 kb on - strand, within Pf6N2E2_3722 at 4336.554 kb on - strand, within Pf6N2E2_3722 at 4336.554 kb on - strand, within Pf6N2E2_3722 at 4336.554 kb on - strand, within Pf6N2E2_3722 at 4336.560 kb on - strand, within Pf6N2E2_3722 at 4336.560 kb on - strand, within Pf6N2E2_3722 at 4336.754 kb on + strand, within Pf6N2E2_3722 at 4336.754 kb on + strand, within Pf6N2E2_3722 at 4336.754 kb on + strand, within Pf6N2E2_3722 at 4336.754 kb on + strand, within Pf6N2E2_3722 at 4336.755 kb on - strand, within Pf6N2E2_3722 at 4336.908 kb on - strand, within Pf6N2E2_3722 at 4336.908 kb on - strand, within Pf6N2E2_3722 at 4337.029 kb on - strand, within Pf6N2E2_3722 at 4337.029 kb on - strand, within Pf6N2E2_3722 at 4337.029 kb on - strand, within Pf6N2E2_3722 at 4337.098 kb on + strand, within Pf6N2E2_3722 at 4337.180 kb on + strand at 4337.180 kb on + strand at 4337.180 kb on + strand at 4337.180 kb on + strand at 4337.181 kb on - strand at 4337.181 kb on - strand at 4337.181 kb on - strand at 4337.181 kb on - strand at 4337.245 kb on + strand at 4337.245 kb on + strand at 4337.246 kb on - strand at 4337.246 kb on - strand at 4337.246 kb on - strand at 4337.246 kb on - strand at 4337.246 kb on - strand at 4337.246 kb on - strand at 4337.562 kb on - strand, within Pf6N2E2_3723 at 4337.739 kb on + strand, within Pf6N2E2_3723 at 4337.740 kb on - strand, within Pf6N2E2_3723 at 4338.339 kb on + strand, within Pf6N2E2_3723 at 4338.339 kb on + strand, within Pf6N2E2_3723 at 4338.544 kb on + strand at 4338.545 kb on - strand at 4338.545 kb on - strand at 4338.545 kb on - strand at 4338.559 kb on + strand at 4338.559 kb on + strand at 4338.560 kb on - strand at 4338.560 kb on - strand at 4338.560 kb on - strand at 4338.724 kb on + strand, within Pf6N2E2_3724 at 4338.725 kb on - strand, within Pf6N2E2_3724 at 4338.953 kb on + strand, within Pf6N2E2_3724 at 4339.000 kb on + strand, within Pf6N2E2_3724 at 4339.000 kb on + strand, within Pf6N2E2_3724 at 4339.000 kb on + strand, within Pf6N2E2_3724 at 4339.001 kb on - strand, within Pf6N2E2_3724 at 4339.001 kb on - strand, within Pf6N2E2_3724 at 4339.069 kb on + strand, within Pf6N2E2_3724
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,336,341 - Pf6N2E2_3722 0.18 +0.2 4,336,553 + Pf6N2E2_3722 0.36 +0.3 4,336,553 + Pf6N2E2_3722 0.36 +0.9 4,336,553 + Pf6N2E2_3722 0.36 +0.5 4,336,553 + Pf6N2E2_3722 0.36 -0.8 4,336,553 + Pf6N2E2_3722 0.36 +0.4 4,336,553 + Pf6N2E2_3722 0.36 +0.5 4,336,553 + Pf6N2E2_3722 0.36 +0.3 4,336,554 - Pf6N2E2_3722 0.36 +1.1 4,336,554 - Pf6N2E2_3722 0.36 +0.1 4,336,554 - Pf6N2E2_3722 0.36 -0.2 4,336,554 - Pf6N2E2_3722 0.36 +0.5 4,336,554 - Pf6N2E2_3722 0.36 +0.5 4,336,554 - Pf6N2E2_3722 0.36 -0.3 4,336,554 - Pf6N2E2_3722 0.36 +0.3 4,336,554 - Pf6N2E2_3722 0.36 +0.2 4,336,560 - Pf6N2E2_3722 0.37 +0.6 4,336,560 - Pf6N2E2_3722 0.37 -0.3 4,336,754 + Pf6N2E2_3722 0.53 -0.8 4,336,754 + Pf6N2E2_3722 0.53 -0.1 4,336,754 + Pf6N2E2_3722 0.53 +0.2 4,336,754 + Pf6N2E2_3722 0.53 -0.2 4,336,755 - Pf6N2E2_3722 0.53 +0.6 4,336,908 - Pf6N2E2_3722 0.67 -0.4 4,336,908 - Pf6N2E2_3722 0.67 +0.2 4,337,029 - Pf6N2E2_3722 0.77 +0.1 4,337,029 - Pf6N2E2_3722 0.77 +0.5 4,337,029 - Pf6N2E2_3722 0.77 +0.9 4,337,098 + Pf6N2E2_3722 0.83 +0.6 4,337,180 + +1.9 4,337,180 + +0.8 4,337,180 + +0.0 4,337,180 + +1.4 4,337,181 - -0.2 4,337,181 - +0.4 4,337,181 - -0.3 4,337,181 - +0.2 4,337,245 + +0.1 4,337,245 + +0.5 4,337,246 - -0.1 4,337,246 - +0.6 4,337,246 - +0.7 4,337,246 - +0.0 4,337,246 - -0.4 4,337,246 - +0.2 4,337,562 - Pf6N2E2_3723 0.23 -0.4 4,337,739 + Pf6N2E2_3723 0.37 -0.5 4,337,740 - Pf6N2E2_3723 0.37 +0.5 4,338,339 + Pf6N2E2_3723 0.85 -0.9 4,338,339 + Pf6N2E2_3723 0.85 -0.5 4,338,544 + +0.2 4,338,545 - -0.1 4,338,545 - +0.5 4,338,545 - +0.8 4,338,559 + +0.8 4,338,559 + -0.7 4,338,560 - +0.6 4,338,560 - +0.1 4,338,560 - +0.1 4,338,724 + Pf6N2E2_3724 0.26 +0.1 4,338,725 - Pf6N2E2_3724 0.26 -0.1 4,338,953 + Pf6N2E2_3724 0.57 +0.5 4,339,000 + Pf6N2E2_3724 0.63 +0.1 4,339,000 + Pf6N2E2_3724 0.63 -0.2 4,339,000 + Pf6N2E2_3724 0.63 -0.2 4,339,001 - Pf6N2E2_3724 0.64 -0.6 4,339,001 - Pf6N2E2_3724 0.64 -0.2 4,339,069 + Pf6N2E2_3724 0.73 -0.0
Or see this region's nucleotide sequence