Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1584

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1583 and Pf6N2E2_1584 are separated by 117 nucleotidesPf6N2E2_1584 and Pf6N2E2_1585 are separated by 83 nucleotidesPf6N2E2_1585 and Pf6N2E2_1586 overlap by 6 nucleotides Pf6N2E2_1583 - ABC-type protease/lipase transport system, ATPase and permease components, at 1,852,673 to 1,854,457 _1583 Pf6N2E2_1584 - Transcriptional regulator, MarR family / Acetyltransferase (GNAT), at 1,854,575 to 1,855,486 _1584 Pf6N2E2_1585 - hypothetical protein, at 1,855,570 to 1,855,704 _1585 Pf6N2E2_1586 - Transcriptional regulator, TetR family, at 1,855,699 to 1,856,241 _1586 Position (kb) 1854 1855 1856Strain fitness (log2 ratio) -2 -1 0 1 2at 1853.676 kb on + strand, within Pf6N2E2_1583at 1853.723 kb on - strand, within Pf6N2E2_1583at 1853.875 kb on - strand, within Pf6N2E2_1583at 1854.024 kb on + strand, within Pf6N2E2_1583at 1854.024 kb on + strand, within Pf6N2E2_1583at 1854.025 kb on - strand, within Pf6N2E2_1583at 1854.163 kb on + strand, within Pf6N2E2_1583at 1854.163 kb on + strand, within Pf6N2E2_1583at 1854.163 kb on + strand, within Pf6N2E2_1583at 1854.165 kb on + strand, within Pf6N2E2_1583at 1854.166 kb on - strand, within Pf6N2E2_1583at 1854.245 kb on + strand, within Pf6N2E2_1583at 1854.295 kb on + strandat 1854.339 kb on + strandat 1854.340 kb on - strandat 1854.351 kb on - strandat 1854.495 kb on - strandat 1854.519 kb on - strandat 1854.776 kb on + strand, within Pf6N2E2_1584at 1854.882 kb on - strand, within Pf6N2E2_1584at 1855.006 kb on - strand, within Pf6N2E2_1584at 1855.129 kb on - strand, within Pf6N2E2_1584at 1855.172 kb on + strand, within Pf6N2E2_1584at 1855.173 kb on - strand, within Pf6N2E2_1584at 1855.412 kb on + strandat 1855.413 kb on - strandat 1855.567 kb on + strandat 1855.568 kb on - strandat 1855.680 kb on + strand, within Pf6N2E2_1585at 1855.701 kb on - strandat 1855.701 kb on - strandat 1855.701 kb on - strandat 1855.701 kb on - strandat 1855.701 kb on - strandat 1855.778 kb on - strand, within Pf6N2E2_1586at 1856.324 kb on - strandat 1856.324 kb on - strandat 1856.324 kb on - strandat 1856.327 kb on + strandat 1856.328 kb on - strandat 1856.328 kb on - strandat 1856.387 kb on + strandat 1856.387 kb on + strandat 1856.388 kb on - strandat 1856.388 kb on - strandat 1856.393 kb on - strandat 1856.416 kb on - strandat 1856.416 kb on - strandat 1856.443 kb on + strandat 1856.444 kb on - strandat 1856.444 kb on - strandat 1856.444 kb on - strandat 1856.454 kb on + strandat 1856.455 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,853,676 + Pf6N2E2_1583 0.56 +0.3
1,853,723 - Pf6N2E2_1583 0.59 +0.2
1,853,875 - Pf6N2E2_1583 0.67 -0.0
1,854,024 + Pf6N2E2_1583 0.76 +0.9
1,854,024 + Pf6N2E2_1583 0.76 -0.2
1,854,025 - Pf6N2E2_1583 0.76 -0.2
1,854,163 + Pf6N2E2_1583 0.83 -0.3
1,854,163 + Pf6N2E2_1583 0.83 +0.2
1,854,163 + Pf6N2E2_1583 0.83 +0.2
1,854,165 + Pf6N2E2_1583 0.84 +0.1
1,854,166 - Pf6N2E2_1583 0.84 +0.5
1,854,245 + Pf6N2E2_1583 0.88 -1.5
1,854,295 + +1.4
1,854,339 + -0.0
1,854,340 - +1.0
1,854,351 - +0.4
1,854,495 - -0.1
1,854,519 - -0.6
1,854,776 + Pf6N2E2_1584 0.22 -0.2
1,854,882 - Pf6N2E2_1584 0.34 -2.5
1,855,006 - Pf6N2E2_1584 0.47 +0.6
1,855,129 - Pf6N2E2_1584 0.61 -0.9
1,855,172 + Pf6N2E2_1584 0.65 +0.0
1,855,173 - Pf6N2E2_1584 0.66 -0.6
1,855,412 + -0.8
1,855,413 - +0.9
1,855,567 + -0.6
1,855,568 - +0.3
1,855,680 + Pf6N2E2_1585 0.81 +0.4
1,855,701 - -0.6
1,855,701 - -1.9
1,855,701 - +0.0
1,855,701 - -0.6
1,855,701 - +0.4
1,855,778 - Pf6N2E2_1586 0.15 -0.9
1,856,324 - -0.7
1,856,324 - -0.4
1,856,324 - -1.3
1,856,327 + +0.4
1,856,328 - +0.2
1,856,328 - -0.5
1,856,387 + +0.2
1,856,387 + +1.8
1,856,388 - +0.4
1,856,388 - +0.3
1,856,393 - +0.4
1,856,416 - +0.4
1,856,416 - -0.0
1,856,443 + +1.1
1,856,444 - -0.5
1,856,444 - +0.3
1,856,444 - -0.0
1,856,454 + -1.4
1,856,455 - +0.4

Or see this region's nucleotide sequence