Experiment: Growth at pH7 and (C) Trisodium citrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS18570 and PFLU_RS18575 are separated by 225 nucleotides PFLU_RS18575 and PFLU_RS18580 are separated by 59 nucleotides
PFLU_RS18570: PFLU_RS18570 - NADP-dependent isocitrate dehydrogenase, at 4,202,539 to 4,204,764
_RS18570
PFLU_RS18575: PFLU_RS18575 - NUDIX hydrolase, at 4,204,990 to 4,205,436
_RS18575
PFLU_RS18580: PFLU_RS18580 - tRNA 2-thiouridine(34) synthase MnmA, at 4,205,496 to 4,206,620
_RS18580
Position (kb) 4204
4205
4206 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4204.762 kb on + strand at 4204.762 kb on + strand at 4204.762 kb on + strand at 4204.762 kb on + strand at 4204.762 kb on + strand at 4204.762 kb on + strand at 4204.762 kb on + strand at 4204.762 kb on + strand at 4204.762 kb on + strand at 4204.762 kb on + strand at 4204.763 kb on - strand at 4204.763 kb on - strand at 4204.763 kb on - strand at 4204.763 kb on - strand at 4204.763 kb on - strand at 4204.763 kb on - strand at 4204.763 kb on - strand at 4204.763 kb on - strand at 4204.763 kb on - strand at 4204.763 kb on - strand at 4204.763 kb on - strand at 4204.763 kb on - strand at 4204.763 kb on - strand at 4204.763 kb on - strand at 4204.763 kb on - strand at 4204.763 kb on - strand at 4204.763 kb on - strand at 4204.763 kb on - strand at 4204.770 kb on + strand at 4204.770 kb on + strand at 4204.770 kb on + strand at 4204.770 kb on + strand at 4204.770 kb on + strand at 4204.770 kb on + strand at 4204.770 kb on + strand at 4204.771 kb on - strand at 4204.771 kb on - strand at 4204.771 kb on - strand at 4204.771 kb on - strand at 4204.771 kb on - strand at 4204.771 kb on - strand at 4204.771 kb on - strand at 4204.771 kb on - strand at 4204.771 kb on - strand at 4204.771 kb on - strand at 4204.771 kb on - strand at 4204.771 kb on - strand at 4204.771 kb on - strand at 4204.771 kb on - strand at 4204.814 kb on + strand at 4204.814 kb on + strand at 4204.814 kb on + strand at 4204.814 kb on + strand at 4204.814 kb on + strand at 4204.814 kb on + strand at 4204.814 kb on + strand at 4204.815 kb on - strand at 4204.815 kb on - strand at 4204.815 kb on - strand at 4204.815 kb on - strand at 4204.840 kb on - strand at 4204.840 kb on - strand at 4204.892 kb on + strand at 4204.892 kb on + strand at 4204.892 kb on + strand at 4204.892 kb on + strand at 4204.892 kb on + strand at 4204.892 kb on + strand at 4204.892 kb on + strand at 4204.892 kb on + strand at 4204.892 kb on + strand at 4204.892 kb on + strand at 4204.892 kb on + strand at 4204.892 kb on + strand at 4204.892 kb on + strand at 4204.892 kb on + strand at 4204.893 kb on - strand at 4204.893 kb on - strand at 4204.893 kb on - strand at 4204.893 kb on - strand at 4204.893 kb on - strand at 4204.893 kb on - strand at 4204.893 kb on - strand at 4204.893 kb on - strand at 4204.893 kb on - strand at 4204.893 kb on - strand at 4204.893 kb on - strand at 4204.893 kb on - strand at 4204.893 kb on - strand at 4204.973 kb on + strand at 4204.973 kb on + strand at 4204.974 kb on - strand at 4204.974 kb on - strand at 4204.974 kb on - strand at 4204.974 kb on - strand at 4205.010 kb on + strand at 4205.010 kb on + strand at 4205.010 kb on + strand at 4205.010 kb on + strand at 4205.010 kb on + strand at 4205.011 kb on - strand at 4205.011 kb on - strand at 4205.011 kb on - strand at 4205.011 kb on - strand at 4205.011 kb on - strand at 4205.011 kb on - strand at 4205.011 kb on - strand at 4205.011 kb on - strand at 4205.197 kb on + strand, within PFLU_RS18575 at 4205.197 kb on + strand, within PFLU_RS18575 at 4205.197 kb on + strand, within PFLU_RS18575 at 4205.197 kb on + strand, within PFLU_RS18575 at 4205.198 kb on - strand, within PFLU_RS18575 at 4205.198 kb on - strand, within PFLU_RS18575 at 4205.198 kb on - strand, within PFLU_RS18575 at 4205.198 kb on - strand, within PFLU_RS18575 at 4205.198 kb on - strand, within PFLU_RS18575 at 4205.198 kb on - strand, within PFLU_RS18575 at 4205.198 kb on - strand, within PFLU_RS18575 at 4205.198 kb on - strand, within PFLU_RS18575 at 4205.198 kb on - strand, within PFLU_RS18575 at 4205.198 kb on - strand, within PFLU_RS18575 at 4205.198 kb on - strand, within PFLU_RS18575 at 4205.198 kb on - strand, within PFLU_RS18575 at 4205.198 kb on - strand, within PFLU_RS18575 at 4205.198 kb on - strand, within PFLU_RS18575 at 4205.203 kb on + strand, within PFLU_RS18575 at 4205.204 kb on - strand, within PFLU_RS18575 at 4205.204 kb on - strand, within PFLU_RS18575 at 4205.230 kb on + strand, within PFLU_RS18575 at 4205.230 kb on + strand, within PFLU_RS18575 at 4205.230 kb on + strand, within PFLU_RS18575 at 4205.231 kb on - strand, within PFLU_RS18575 at 4205.231 kb on - strand, within PFLU_RS18575 at 4205.231 kb on - strand, within PFLU_RS18575 at 4205.231 kb on - strand, within PFLU_RS18575 at 4205.278 kb on + strand, within PFLU_RS18575 at 4205.278 kb on + strand, within PFLU_RS18575 at 4205.376 kb on + strand, within PFLU_RS18575 at 4205.376 kb on + strand, within PFLU_RS18575 at 4205.376 kb on + strand, within PFLU_RS18575 at 4205.376 kb on + strand, within PFLU_RS18575 at 4205.377 kb on - strand, within PFLU_RS18575 at 4205.386 kb on + strand, within PFLU_RS18575 at 4205.386 kb on + strand, within PFLU_RS18575 at 4205.386 kb on + strand, within PFLU_RS18575 at 4205.386 kb on + strand, within PFLU_RS18575 at 4205.386 kb on + strand, within PFLU_RS18575 at 4205.386 kb on + strand, within PFLU_RS18575 at 4205.387 kb on - strand, within PFLU_RS18575 at 4205.387 kb on - strand, within PFLU_RS18575 at 4205.387 kb on - strand, within PFLU_RS18575 at 4205.387 kb on - strand, within PFLU_RS18575 at 4205.458 kb on - strand at 4205.495 kb on + strand at 4205.495 kb on + strand at 4205.495 kb on + strand at 4205.495 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth at pH7 and (C) Trisodium citrate remove 4,204,762 + -0.2 4,204,762 + -0.1 4,204,762 + -0.8 4,204,762 + -0.2 4,204,762 + -1.9 4,204,762 + -1.2 4,204,762 + +0.7 4,204,762 + -0.8 4,204,762 + +0.0 4,204,762 + +1.6 4,204,763 - -2.8 4,204,763 - -1.4 4,204,763 - -0.4 4,204,763 - +0.0 4,204,763 - +1.2 4,204,763 - -0.5 4,204,763 - -0.9 4,204,763 - -1.1 4,204,763 - -0.6 4,204,763 - -1.9 4,204,763 - -1.1 4,204,763 - -1.6 4,204,763 - -0.6 4,204,763 - -0.9 4,204,763 - -0.4 4,204,763 - +1.2 4,204,763 - -0.0 4,204,763 - -1.8 4,204,770 + +1.8 4,204,770 + +0.4 4,204,770 + +0.7 4,204,770 + -0.0 4,204,770 + +0.0 4,204,770 + -1.0 4,204,770 + +0.4 4,204,771 - -0.5 4,204,771 - +0.5 4,204,771 - +1.2 4,204,771 - -1.9 4,204,771 - +0.5 4,204,771 - -0.3 4,204,771 - -0.2 4,204,771 - -1.7 4,204,771 - -0.7 4,204,771 - -0.8 4,204,771 - +0.0 4,204,771 - -1.9 4,204,771 - -1.8 4,204,771 - -2.5 4,204,814 + +0.7 4,204,814 + +0.4 4,204,814 + +0.6 4,204,814 + +1.5 4,204,814 + +0.5 4,204,814 + -0.1 4,204,814 + +2.6 4,204,815 - +1.0 4,204,815 - +0.1 4,204,815 - +1.2 4,204,815 - -0.2 4,204,840 - -0.2 4,204,840 - -1.2 4,204,892 + -1.6 4,204,892 + -0.8 4,204,892 + +1.2 4,204,892 + +0.4 4,204,892 + -0.7 4,204,892 + -0.8 4,204,892 + -1.8 4,204,892 + -0.4 4,204,892 + +0.8 4,204,892 + -0.8 4,204,892 + -0.3 4,204,892 + -1.2 4,204,892 + +1.6 4,204,892 + -1.4 4,204,893 - -0.2 4,204,893 - -0.4 4,204,893 - -0.6 4,204,893 - +0.1 4,204,893 - +1.2 4,204,893 - -0.7 4,204,893 - -0.6 4,204,893 - +0.2 4,204,893 - +0.6 4,204,893 - +1.2 4,204,893 - +1.2 4,204,893 - -0.8 4,204,893 - -0.4 4,204,973 + +0.9 4,204,973 + +1.2 4,204,974 - +0.3 4,204,974 - -1.2 4,204,974 - -1.7 4,204,974 - +1.2 4,205,010 + -0.6 4,205,010 + +0.5 4,205,010 + -2.1 4,205,010 + -0.8 4,205,010 + +0.6 4,205,011 - +0.9 4,205,011 - -0.4 4,205,011 - +0.4 4,205,011 - +0.0 4,205,011 - -2.4 4,205,011 - +0.4 4,205,011 - -0.4 4,205,011 - +0.9 4,205,197 + PFLU_RS18575 0.46 +0.4 4,205,197 + PFLU_RS18575 0.46 -0.0 4,205,197 + PFLU_RS18575 0.46 +0.0 4,205,197 + PFLU_RS18575 0.46 +0.5 4,205,198 - PFLU_RS18575 0.47 -1.4 4,205,198 - PFLU_RS18575 0.47 +0.6 4,205,198 - PFLU_RS18575 0.47 -0.2 4,205,198 - PFLU_RS18575 0.47 +0.2 4,205,198 - PFLU_RS18575 0.47 -1.6 4,205,198 - PFLU_RS18575 0.47 +0.1 4,205,198 - PFLU_RS18575 0.47 +0.1 4,205,198 - PFLU_RS18575 0.47 +0.6 4,205,198 - PFLU_RS18575 0.47 -2.2 4,205,198 - PFLU_RS18575 0.47 +0.1 4,205,198 - PFLU_RS18575 0.47 +1.9 4,205,198 - PFLU_RS18575 0.47 +1.0 4,205,198 - PFLU_RS18575 0.47 -0.7 4,205,198 - PFLU_RS18575 0.47 -1.4 4,205,203 + PFLU_RS18575 0.48 -0.9 4,205,204 - PFLU_RS18575 0.48 -1.1 4,205,204 - PFLU_RS18575 0.48 -1.1 4,205,230 + PFLU_RS18575 0.54 -1.1 4,205,230 + PFLU_RS18575 0.54 +0.4 4,205,230 + PFLU_RS18575 0.54 -1.4 4,205,231 - PFLU_RS18575 0.54 -0.6 4,205,231 - PFLU_RS18575 0.54 -1.4 4,205,231 - PFLU_RS18575 0.54 +2.2 4,205,231 - PFLU_RS18575 0.54 +0.1 4,205,278 + PFLU_RS18575 0.64 -0.4 4,205,278 + PFLU_RS18575 0.64 -0.8 4,205,376 + PFLU_RS18575 0.86 +1.2 4,205,376 + PFLU_RS18575 0.86 -0.6 4,205,376 + PFLU_RS18575 0.86 -0.4 4,205,376 + PFLU_RS18575 0.86 +1.4 4,205,377 - PFLU_RS18575 0.87 +0.9 4,205,386 + PFLU_RS18575 0.89 +0.4 4,205,386 + PFLU_RS18575 0.89 -1.1 4,205,386 + PFLU_RS18575 0.89 -0.4 4,205,386 + PFLU_RS18575 0.89 +0.7 4,205,386 + PFLU_RS18575 0.89 -0.5 4,205,386 + PFLU_RS18575 0.89 -2.2 4,205,387 - PFLU_RS18575 0.89 +0.2 4,205,387 - PFLU_RS18575 0.89 -0.5 4,205,387 - PFLU_RS18575 0.89 +0.8 4,205,387 - PFLU_RS18575 0.89 +0.3 4,205,458 - -0.5 4,205,495 + +0.9 4,205,495 + +0.1 4,205,495 + +0.4 4,205,495 + -1.8
Or see this region's nucleotide sequence