Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2069

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2067 and Ga0059261_2068 are separated by 28 nucleotidesGa0059261_2068 and Ga0059261_2069 are separated by 14 nucleotidesGa0059261_2069 and Ga0059261_2070 are separated by 9 nucleotidesGa0059261_2070 and Ga0059261_2071 overlap by 8 nucleotides Ga0059261_2067: Ga0059261_2067 - Flagellar hook-length control protein, at 2,166,927 to 2,168,108 _2067 Ga0059261_2068: Ga0059261_2068 - hypothetical protein, at 2,168,137 to 2,168,562 _2068 Ga0059261_2069: Ga0059261_2069 - ATPase, FliI/YscN family, at 2,168,577 to 2,169,905 _2069 Ga0059261_2070: Ga0059261_2070 - Flagellar assembly protein FliH, at 2,169,915 to 2,170,634 _2070 Ga0059261_2071: Ga0059261_2071 - flagellar motor switch protein FliG, at 2,170,627 to 2,171,637 _2071 Position (kb) 2168 2169 2170Strain fitness (log2 ratio) -2 -1 0 1at 2167.803 kb on + strand, within Ga0059261_2067at 2167.804 kb on - strand, within Ga0059261_2067at 2168.040 kb on + strandat 2168.040 kb on + strandat 2168.040 kb on + strandat 2168.040 kb on + strandat 2168.040 kb on + strandat 2168.041 kb on - strandat 2168.041 kb on - strandat 2168.041 kb on - strandat 2168.041 kb on - strandat 2168.175 kb on + strandat 2168.175 kb on + strandat 2168.175 kb on + strandat 2168.175 kb on + strandat 2168.176 kb on - strandat 2168.176 kb on - strandat 2168.360 kb on + strand, within Ga0059261_2068at 2168.360 kb on + strand, within Ga0059261_2068at 2168.360 kb on + strand, within Ga0059261_2068at 2168.360 kb on + strand, within Ga0059261_2068at 2168.360 kb on + strand, within Ga0059261_2068at 2168.360 kb on + strand, within Ga0059261_2068at 2168.361 kb on - strand, within Ga0059261_2068at 2168.361 kb on - strand, within Ga0059261_2068at 2168.514 kb on + strand, within Ga0059261_2068at 2168.514 kb on + strand, within Ga0059261_2068at 2168.641 kb on + strandat 2168.641 kb on + strandat 2168.641 kb on + strandat 2168.641 kb on + strandat 2168.641 kb on + strandat 2168.641 kb on + strandat 2168.641 kb on + strandat 2168.642 kb on - strandat 2168.642 kb on - strandat 2168.642 kb on - strandat 2168.642 kb on - strandat 2168.642 kb on - strandat 2168.654 kb on + strandat 2168.654 kb on + strandat 2168.654 kb on + strandat 2168.654 kb on + strandat 2168.655 kb on - strandat 2168.656 kb on + strandat 2168.656 kb on + strandat 2168.656 kb on + strandat 2168.656 kb on + strandat 2168.656 kb on + strandat 2168.656 kb on + strandat 2168.656 kb on + strandat 2168.656 kb on + strandat 2168.657 kb on - strandat 2168.657 kb on - strandat 2168.657 kb on - strandat 2168.657 kb on - strandat 2168.657 kb on - strandat 2168.657 kb on - strandat 2168.657 kb on - strandat 2168.657 kb on - strandat 2168.657 kb on - strandat 2168.657 kb on - strandat 2168.657 kb on - strandat 2168.657 kb on - strandat 2168.755 kb on + strand, within Ga0059261_2069at 2168.755 kb on + strand, within Ga0059261_2069at 2168.755 kb on + strand, within Ga0059261_2069at 2168.755 kb on + strand, within Ga0059261_2069at 2168.755 kb on + strand, within Ga0059261_2069at 2168.755 kb on + strand, within Ga0059261_2069at 2168.755 kb on + strand, within Ga0059261_2069at 2168.755 kb on + strand, within Ga0059261_2069at 2168.755 kb on + strand, within Ga0059261_2069at 2168.756 kb on - strand, within Ga0059261_2069at 2168.756 kb on - strand, within Ga0059261_2069at 2168.756 kb on - strand, within Ga0059261_2069at 2168.756 kb on - strand, within Ga0059261_2069at 2168.756 kb on - strand, within Ga0059261_2069at 2168.756 kb on - strand, within Ga0059261_2069at 2168.756 kb on - strand, within Ga0059261_2069at 2168.756 kb on - strand, within Ga0059261_2069at 2168.860 kb on + strand, within Ga0059261_2069at 2168.860 kb on + strand, within Ga0059261_2069at 2168.897 kb on + strand, within Ga0059261_2069at 2168.897 kb on + strand, within Ga0059261_2069at 2168.897 kb on + strand, within Ga0059261_2069at 2168.897 kb on + strand, within Ga0059261_2069at 2168.898 kb on - strand, within Ga0059261_2069at 2168.898 kb on - strand, within Ga0059261_2069at 2168.898 kb on - strand, within Ga0059261_2069at 2168.898 kb on - strand, within Ga0059261_2069at 2168.898 kb on - strand, within Ga0059261_2069at 2168.898 kb on - strand, within Ga0059261_2069at 2168.898 kb on - strand, within Ga0059261_2069at 2168.898 kb on - strand, within Ga0059261_2069at 2168.969 kb on + strand, within Ga0059261_2069at 2168.971 kb on + strand, within Ga0059261_2069at 2168.971 kb on + strand, within Ga0059261_2069at 2168.971 kb on + strand, within Ga0059261_2069at 2168.971 kb on + strand, within Ga0059261_2069at 2168.972 kb on - strand, within Ga0059261_2069at 2168.972 kb on - strand, within Ga0059261_2069at 2168.972 kb on - strand, within Ga0059261_2069at 2168.972 kb on - strand, within Ga0059261_2069at 2168.972 kb on - strand, within Ga0059261_2069at 2168.972 kb on - strand, within Ga0059261_2069at 2169.483 kb on + strand, within Ga0059261_2069at 2169.483 kb on + strand, within Ga0059261_2069at 2169.484 kb on - strand, within Ga0059261_2069at 2169.588 kb on + strand, within Ga0059261_2069at 2169.588 kb on + strand, within Ga0059261_2069at 2169.589 kb on - strand, within Ga0059261_2069at 2169.589 kb on - strand, within Ga0059261_2069at 2169.814 kb on + strandat 2169.814 kb on + strandat 2169.814 kb on + strandat 2169.814 kb on + strandat 2169.814 kb on + strandat 2169.814 kb on + strandat 2169.814 kb on + strandat 2169.815 kb on - strandat 2169.815 kb on - strandat 2169.815 kb on - strandat 2169.815 kb on - strandat 2169.880 kb on + strandat 2169.880 kb on + strandat 2169.881 kb on - strandat 2169.900 kb on - strandat 2169.900 kb on - strandat 2169.900 kb on - strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.038 kb on - strand, within Ga0059261_2070at 2170.038 kb on - strand, within Ga0059261_2070at 2170.038 kb on - strand, within Ga0059261_2070at 2170.038 kb on - strand, within Ga0059261_2070at 2170.370 kb on - strand, within Ga0059261_2070at 2170.634 kb on + strandat 2170.634 kb on + strandat 2170.634 kb on + strandat 2170.634 kb on + strandat 2170.634 kb on + strandat 2170.634 kb on + strandat 2170.634 kb on + strandat 2170.634 kb on + strandat 2170.634 kb on + strandat 2170.634 kb on + strandat 2170.635 kb on - strandat 2170.635 kb on - strandat 2170.635 kb on - strandat 2170.635 kb on - strandat 2170.635 kb on - strandat 2170.635 kb on - strandat 2170.635 kb on - strandat 2170.635 kb on - strandat 2170.890 kb on + strand, within Ga0059261_2071at 2170.890 kb on + strand, within Ga0059261_2071at 2170.890 kb on + strand, within Ga0059261_2071at 2170.890 kb on + strand, within Ga0059261_2071

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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2,167,803 + Ga0059261_2067 0.74 -0.5
2,167,804 - Ga0059261_2067 0.74 -1.8
2,168,040 + -0.2
2,168,040 + +0.7
2,168,040 + +0.4
2,168,040 + +0.0
2,168,040 + -0.2
2,168,041 - +1.0
2,168,041 - -0.3
2,168,041 - +0.4
2,168,041 - +1.3
2,168,175 + +0.0
2,168,175 + +0.2
2,168,175 + -0.6
2,168,175 + +0.3
2,168,176 - -0.6
2,168,176 - -0.2
2,168,360 + Ga0059261_2068 0.52 +0.6
2,168,360 + Ga0059261_2068 0.52 -0.1
2,168,360 + Ga0059261_2068 0.52 +0.3
2,168,360 + Ga0059261_2068 0.52 +0.2
2,168,360 + Ga0059261_2068 0.52 +0.2
2,168,360 + Ga0059261_2068 0.52 +1.7
2,168,361 - Ga0059261_2068 0.53 +0.7
2,168,361 - Ga0059261_2068 0.53 +0.6
2,168,514 + Ga0059261_2068 0.88 +0.1
2,168,514 + Ga0059261_2068 0.88 +0.3
2,168,641 + +0.2
2,168,641 + -0.6
2,168,641 + -0.9
2,168,641 + -1.3
2,168,641 + -0.1
2,168,641 + +0.1
2,168,641 + -0.0
2,168,642 - +0.2
2,168,642 - -0.1
2,168,642 - -0.1
2,168,642 - +0.1
2,168,642 - +0.6
2,168,654 + -0.1
2,168,654 + -1.8
2,168,654 + -0.1
2,168,654 + +1.0
2,168,655 - -0.3
2,168,656 + -1.9
2,168,656 + +0.9
2,168,656 + +0.2
2,168,656 + +0.2
2,168,656 + -0.1
2,168,656 + -0.1
2,168,656 + -0.1
2,168,656 + +0.4
2,168,657 - -1.3
2,168,657 - +0.9
2,168,657 - +0.3
2,168,657 - +0.8
2,168,657 - +0.3
2,168,657 - +0.8
2,168,657 - +1.2
2,168,657 - +0.2
2,168,657 - +0.6
2,168,657 - -0.2
2,168,657 - -0.3
2,168,657 - +1.4
2,168,755 + Ga0059261_2069 0.13 -0.3
2,168,755 + Ga0059261_2069 0.13 -0.9
2,168,755 + Ga0059261_2069 0.13 -0.7
2,168,755 + Ga0059261_2069 0.13 +0.4
2,168,755 + Ga0059261_2069 0.13 -0.6
2,168,755 + Ga0059261_2069 0.13 +1.3
2,168,755 + Ga0059261_2069 0.13 -0.8
2,168,755 + Ga0059261_2069 0.13 -0.5
2,168,755 + Ga0059261_2069 0.13 -0.4
2,168,756 - Ga0059261_2069 0.13 -0.1
2,168,756 - Ga0059261_2069 0.13 +0.1
2,168,756 - Ga0059261_2069 0.13 +0.1
2,168,756 - Ga0059261_2069 0.13 -0.5
2,168,756 - Ga0059261_2069 0.13 -0.9
2,168,756 - Ga0059261_2069 0.13 +0.3
2,168,756 - Ga0059261_2069 0.13 +0.3
2,168,756 - Ga0059261_2069 0.13 +0.0
2,168,860 + Ga0059261_2069 0.21 +0.2
2,168,860 + Ga0059261_2069 0.21 -1.2
2,168,897 + Ga0059261_2069 0.24 -1.1
2,168,897 + Ga0059261_2069 0.24 +0.3
2,168,897 + Ga0059261_2069 0.24 -0.2
2,168,897 + Ga0059261_2069 0.24 -0.7
2,168,898 - Ga0059261_2069 0.24 -1.7
2,168,898 - Ga0059261_2069 0.24 +1.6
2,168,898 - Ga0059261_2069 0.24 +0.3
2,168,898 - Ga0059261_2069 0.24 -0.8
2,168,898 - Ga0059261_2069 0.24 +0.4
2,168,898 - Ga0059261_2069 0.24 -0.2
2,168,898 - Ga0059261_2069 0.24 +0.1
2,168,898 - Ga0059261_2069 0.24 -0.2
2,168,969 + Ga0059261_2069 0.29 +0.2
2,168,971 + Ga0059261_2069 0.30 -0.8
2,168,971 + Ga0059261_2069 0.30 -1.4
2,168,971 + Ga0059261_2069 0.30 -1.0
2,168,971 + Ga0059261_2069 0.30 +0.1
2,168,972 - Ga0059261_2069 0.30 -0.2
2,168,972 - Ga0059261_2069 0.30 -0.7
2,168,972 - Ga0059261_2069 0.30 +0.6
2,168,972 - Ga0059261_2069 0.30 +0.4
2,168,972 - Ga0059261_2069 0.30 +0.3
2,168,972 - Ga0059261_2069 0.30 -0.2
2,169,483 + Ga0059261_2069 0.68 +0.1
2,169,483 + Ga0059261_2069 0.68 +0.4
2,169,484 - Ga0059261_2069 0.68 -1.5
2,169,588 + Ga0059261_2069 0.76 -0.8
2,169,588 + Ga0059261_2069 0.76 -0.5
2,169,589 - Ga0059261_2069 0.76 -0.0
2,169,589 - Ga0059261_2069 0.76 -1.3
2,169,814 + -0.2
2,169,814 + +0.9
2,169,814 + +0.0
2,169,814 + +0.5
2,169,814 + +0.8
2,169,814 + +0.1
2,169,814 + +0.8
2,169,815 - -0.5
2,169,815 - +0.1
2,169,815 - -0.9
2,169,815 - +0.3
2,169,880 + -0.0
2,169,880 + +0.1
2,169,881 - +0.2
2,169,900 - -0.2
2,169,900 - -0.9
2,169,900 - +0.3
2,169,901 + +0.4
2,169,901 + -0.6
2,169,901 + +0.3
2,169,901 + +0.2
2,169,901 + -0.7
2,169,901 + +0.4
2,169,901 + +0.4
2,169,901 + -0.4
2,169,901 + +0.0
2,169,901 + +0.3
2,169,901 + -0.2
2,169,901 + +0.1
2,169,901 + -0.6
2,169,901 + -0.1
2,169,901 + -0.8
2,169,901 + -1.0
2,169,901 + +1.1
2,169,901 + +0.6
2,169,902 - +0.5
2,169,902 - -0.6
2,169,902 - +0.9
2,169,902 - -0.4
2,169,902 - +0.7
2,169,902 - +0.1
2,169,902 - +1.1
2,169,902 - -0.1
2,169,902 - +0.0
2,169,902 - -1.2
2,169,902 - +0.2
2,169,902 - -0.7
2,169,902 - -0.1
2,169,902 - +0.8
2,169,902 - -0.2
2,170,037 + Ga0059261_2070 0.17 -0.2
2,170,037 + Ga0059261_2070 0.17 -0.0
2,170,037 + Ga0059261_2070 0.17 -0.7
2,170,037 + Ga0059261_2070 0.17 -0.4
2,170,037 + Ga0059261_2070 0.17 -0.5
2,170,037 + Ga0059261_2070 0.17 +0.2
2,170,037 + Ga0059261_2070 0.17 -0.1
2,170,037 + Ga0059261_2070 0.17 -1.7
2,170,037 + Ga0059261_2070 0.17 -0.7
2,170,037 + Ga0059261_2070 0.17 +0.0
2,170,037 + Ga0059261_2070 0.17 -1.0
2,170,037 + Ga0059261_2070 0.17 -1.6
2,170,037 + Ga0059261_2070 0.17 -0.3
2,170,037 + Ga0059261_2070 0.17 -1.6
2,170,038 - Ga0059261_2070 0.17 +0.1
2,170,038 - Ga0059261_2070 0.17 -1.7
2,170,038 - Ga0059261_2070 0.17 -0.1
2,170,038 - Ga0059261_2070 0.17 -0.3
2,170,370 - Ga0059261_2070 0.63 -0.4
2,170,634 + -0.5
2,170,634 + +0.5
2,170,634 + -0.3
2,170,634 + -0.9
2,170,634 + +0.1
2,170,634 + -0.4
2,170,634 + +1.2
2,170,634 + +0.1
2,170,634 + +0.5
2,170,634 + +0.1
2,170,635 - +0.9
2,170,635 - +0.4
2,170,635 - -0.0
2,170,635 - -0.5
2,170,635 - +0.3
2,170,635 - +0.9
2,170,635 - +0.0
2,170,635 - +0.3
2,170,890 + Ga0059261_2071 0.26 +0.2
2,170,890 + Ga0059261_2071 0.26 -1.2
2,170,890 + Ga0059261_2071 0.26 -1.6
2,170,890 + Ga0059261_2071 0.26 +0.3

Or see this region's nucleotide sequence