Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1037

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1034 and Ga0059261_1035 overlap by 4 nucleotidesGa0059261_1035 and Ga0059261_1036 are separated by 3 nucleotidesGa0059261_1036 and Ga0059261_1037 are separated by 56 nucleotidesGa0059261_1037 and Ga0059261_1038 are separated by 29 nucleotidesGa0059261_1038 and Ga0059261_1039 are separated by 44 nucleotides Ga0059261_1034: Ga0059261_1034 - haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 1,071,848 to 1,072,507 _1034 Ga0059261_1035: Ga0059261_1035 - hypothetical protein, at 1,072,504 to 1,072,725 _1035 Ga0059261_1036: Ga0059261_1036 - Chaperone required for the assembly of the mitochondrial F1-ATPase, at 1,072,729 to 1,073,418 _1036 Ga0059261_1037: Ga0059261_1037 - hypothetical protein, at 1,073,475 to 1,074,065 _1037 Ga0059261_1038: Ga0059261_1038 - guanylate kinase (EC 2.7.4.8), at 1,074,095 to 1,074,769 _1038 Ga0059261_1039: Ga0059261_1039 - hypothetical protein, at 1,074,814 to 1,075,011 _1039 Position (kb) 1073 1074 1075Strain fitness (log2 ratio) -2 -1 0 1 2at 1072.503 kb on + strandat 1072.531 kb on + strand, within Ga0059261_1035at 1072.657 kb on + strandat 1072.657 kb on + strand, within Ga0059261_1035at 1072.657 kb on + strand, within Ga0059261_1035at 1072.710 kb on + strandat 1072.723 kb on + strandat 1073.417 kb on - strandat 1073.417 kb on - strandat 1073.593 kb on + strand, within Ga0059261_1037at 1073.593 kb on + strand, within Ga0059261_1037at 1073.593 kb on + strand, within Ga0059261_1037at 1073.593 kb on + strand, within Ga0059261_1037at 1073.594 kb on - strand, within Ga0059261_1037at 1073.594 kb on - strand, within Ga0059261_1037at 1073.594 kb on - strand, within Ga0059261_1037at 1073.602 kb on + strand, within Ga0059261_1037at 1073.602 kb on + strand, within Ga0059261_1037at 1073.602 kb on + strand, within Ga0059261_1037at 1073.602 kb on + strand, within Ga0059261_1037at 1073.602 kb on + strand, within Ga0059261_1037at 1073.603 kb on - strand, within Ga0059261_1037at 1073.647 kb on + strand, within Ga0059261_1037at 1073.647 kb on + strand, within Ga0059261_1037at 1073.647 kb on + strand, within Ga0059261_1037at 1073.647 kb on + strand, within Ga0059261_1037at 1073.647 kb on + strand, within Ga0059261_1037at 1073.647 kb on + strand, within Ga0059261_1037at 1073.647 kb on + strand, within Ga0059261_1037at 1073.648 kb on - strand, within Ga0059261_1037at 1073.648 kb on - strand, within Ga0059261_1037at 1073.648 kb on - strand, within Ga0059261_1037at 1073.648 kb on - strand, within Ga0059261_1037at 1073.789 kb on + strand, within Ga0059261_1037at 1073.790 kb on - strand, within Ga0059261_1037at 1073.980 kb on + strand, within Ga0059261_1037at 1073.980 kb on + strand, within Ga0059261_1037at 1073.980 kb on + strand, within Ga0059261_1037at 1073.981 kb on - strand, within Ga0059261_1037at 1073.981 kb on - strand, within Ga0059261_1037at 1074.012 kb on + strandat 1074.012 kb on + strandat 1074.012 kb on + strandat 1074.012 kb on + strandat 1074.012 kb on + strandat 1074.013 kb on - strandat 1074.013 kb on - strandat 1074.013 kb on - strandat 1074.051 kb on + strandat 1074.052 kb on - strandat 1074.052 kb on - strandat 1074.097 kb on - strandat 1074.815 kb on + strandat 1074.816 kb on - strandat 1074.845 kb on + strandat 1074.845 kb on + strand, within Ga0059261_1039at 1074.845 kb on + strand, within Ga0059261_1039at 1074.845 kb on + strand, within Ga0059261_1039at 1074.845 kb on + strand, within Ga0059261_1039at 1074.846 kb on - strand, within Ga0059261_1039at 1074.846 kb on - strand, within Ga0059261_1039at 1074.863 kb on + strand, within Ga0059261_1039at 1074.863 kb on + strand, within Ga0059261_1039at 1074.863 kb on + strand, within Ga0059261_1039at 1074.863 kb on + strand, within Ga0059261_1039at 1074.863 kb on + strand, within Ga0059261_1039at 1074.863 kb on + strand, within Ga0059261_1039at 1074.864 kb on - strand, within Ga0059261_1039at 1074.864 kb on - strand, within Ga0059261_1039at 1074.864 kb on - strand, within Ga0059261_1039at 1074.864 kb on - strand, within Ga0059261_1039at 1074.864 kb on - strand, within Ga0059261_1039at 1074.864 kb on - strand, within Ga0059261_1039at 1075.011 kb on + strandat 1075.011 kb on + strandat 1075.011 kb on + strandat 1075.011 kb on + strandat 1075.012 kb on - strandat 1075.012 kb on - strandat 1075.012 kb on - strandat 1075.012 kb on - strandat 1075.028 kb on + strandat 1075.028 kb on + strandat 1075.028 kb on + strandat 1075.028 kb on + strandat 1075.029 kb on - strandat 1075.029 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,072,503 + -1.4
1,072,531 + Ga0059261_1035 0.12 -2.2
1,072,657 + +1.2
1,072,657 + Ga0059261_1035 0.69 -0.0
1,072,657 + Ga0059261_1035 0.69 +0.1
1,072,710 + +0.6
1,072,723 + -1.4
1,073,417 - +0.6
1,073,417 - +0.5
1,073,593 + Ga0059261_1037 0.20 +0.2
1,073,593 + Ga0059261_1037 0.20 +0.0
1,073,593 + Ga0059261_1037 0.20 +0.2
1,073,593 + Ga0059261_1037 0.20 +0.4
1,073,594 - Ga0059261_1037 0.20 +0.4
1,073,594 - Ga0059261_1037 0.20 +0.6
1,073,594 - Ga0059261_1037 0.20 -1.0
1,073,602 + Ga0059261_1037 0.21 -0.7
1,073,602 + Ga0059261_1037 0.21 -0.4
1,073,602 + Ga0059261_1037 0.21 -0.1
1,073,602 + Ga0059261_1037 0.21 +0.2
1,073,602 + Ga0059261_1037 0.21 +0.2
1,073,603 - Ga0059261_1037 0.22 +0.1
1,073,647 + Ga0059261_1037 0.29 -0.2
1,073,647 + Ga0059261_1037 0.29 +0.8
1,073,647 + Ga0059261_1037 0.29 +1.2
1,073,647 + Ga0059261_1037 0.29 +0.1
1,073,647 + Ga0059261_1037 0.29 +0.7
1,073,647 + Ga0059261_1037 0.29 +0.7
1,073,647 + Ga0059261_1037 0.29 +0.1
1,073,648 - Ga0059261_1037 0.29 -0.1
1,073,648 - Ga0059261_1037 0.29 +0.5
1,073,648 - Ga0059261_1037 0.29 +0.4
1,073,648 - Ga0059261_1037 0.29 +0.7
1,073,789 + Ga0059261_1037 0.53 -0.1
1,073,790 - Ga0059261_1037 0.53 -0.5
1,073,980 + Ga0059261_1037 0.85 +1.2
1,073,980 + Ga0059261_1037 0.85 -0.6
1,073,980 + Ga0059261_1037 0.85 +0.5
1,073,981 - Ga0059261_1037 0.86 +0.1
1,073,981 - Ga0059261_1037 0.86 -0.4
1,074,012 + -2.0
1,074,012 + -0.3
1,074,012 + +0.6
1,074,012 + +0.7
1,074,012 + -0.9
1,074,013 - -0.0
1,074,013 - -0.5
1,074,013 - +1.8
1,074,051 + -1.4
1,074,052 - -0.3
1,074,052 - -0.2
1,074,097 - +0.4
1,074,815 + -0.3
1,074,816 - -0.1
1,074,845 + +1.7
1,074,845 + Ga0059261_1039 0.16 -0.3
1,074,845 + Ga0059261_1039 0.16 +0.1
1,074,845 + Ga0059261_1039 0.16 +1.1
1,074,845 + Ga0059261_1039 0.16 +0.7
1,074,846 - Ga0059261_1039 0.16 +0.3
1,074,846 - Ga0059261_1039 0.16 +0.3
1,074,863 + Ga0059261_1039 0.25 +0.6
1,074,863 + Ga0059261_1039 0.25 -0.1
1,074,863 + Ga0059261_1039 0.25 +0.7
1,074,863 + Ga0059261_1039 0.25 +0.4
1,074,863 + Ga0059261_1039 0.25 +1.0
1,074,863 + Ga0059261_1039 0.25 +0.4
1,074,864 - Ga0059261_1039 0.25 +0.6
1,074,864 - Ga0059261_1039 0.25 +0.5
1,074,864 - Ga0059261_1039 0.25 -0.3
1,074,864 - Ga0059261_1039 0.25 +0.9
1,074,864 - Ga0059261_1039 0.25 +0.5
1,074,864 - Ga0059261_1039 0.25 +0.7
1,075,011 + +0.4
1,075,011 + +0.1
1,075,011 + +0.3
1,075,011 + +0.5
1,075,012 - +0.9
1,075,012 - +0.3
1,075,012 - +0.1
1,075,012 - +1.5
1,075,028 + +0.5
1,075,028 + -1.4
1,075,028 + +0.1
1,075,028 + +0.0
1,075,029 - +0.3
1,075,029 - +0.4

Or see this region's nucleotide sequence