Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_832

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_830 and Ac3H11_831 are separated by 40 nucleotidesAc3H11_831 and Ac3H11_832 are separated by 56 nucleotidesAc3H11_832 and Ac3H11_833 are separated by 498 nucleotides Ac3H11_830 - Probable sulfite reductase, at 113,363 to 114,577 _830 Ac3H11_831 - Cytochrome C553 (soluble cytochrome f), at 114,618 to 114,917 _831 Ac3H11_832 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 114,974 to 116,218 _832 Ac3H11_833 - 2-keto-4-pentenoate hydratase (EC 4.2.1.80), at 116,717 to 117,511 _833 Position (kb) 114 115 116 117Strain fitness (log2 ratio) -2 -1 0 1 2at 114.083 kb on + strand, within Ac3H11_830at 114.107 kb on + strand, within Ac3H11_830at 114.107 kb on + strand, within Ac3H11_830at 114.107 kb on + strand, within Ac3H11_830at 114.107 kb on + strand, within Ac3H11_830at 114.108 kb on - strand, within Ac3H11_830at 114.108 kb on - strand, within Ac3H11_830at 114.108 kb on - strand, within Ac3H11_830at 114.108 kb on - strand, within Ac3H11_830at 114.108 kb on - strand, within Ac3H11_830at 114.108 kb on - strand, within Ac3H11_830at 114.108 kb on - strand, within Ac3H11_830at 114.108 kb on - strand, within Ac3H11_830at 114.527 kb on + strandat 114.528 kb on - strandat 114.584 kb on + strandat 114.584 kb on + strandat 114.585 kb on - strandat 114.585 kb on - strandat 114.585 kb on - strandat 114.585 kb on - strandat 114.585 kb on - strandat 114.585 kb on - strandat 114.840 kb on + strand, within Ac3H11_831at 114.840 kb on + strand, within Ac3H11_831at 114.840 kb on + strand, within Ac3H11_831at 114.840 kb on + strand, within Ac3H11_831at 114.840 kb on + strand, within Ac3H11_831at 114.841 kb on - strand, within Ac3H11_831at 114.915 kb on + strandat 114.915 kb on + strandat 114.916 kb on - strandat 114.916 kb on - strandat 115.026 kb on - strandat 115.026 kb on - strandat 115.026 kb on - strandat 115.365 kb on + strand, within Ac3H11_832at 115.365 kb on + strand, within Ac3H11_832at 115.365 kb on + strand, within Ac3H11_832at 115.365 kb on + strand, within Ac3H11_832at 115.365 kb on + strand, within Ac3H11_832at 115.366 kb on - strand, within Ac3H11_832at 115.452 kb on + strand, within Ac3H11_832at 115.467 kb on + strand, within Ac3H11_832at 115.722 kb on + strand, within Ac3H11_832at 115.722 kb on + strand, within Ac3H11_832at 115.722 kb on + strand, within Ac3H11_832at 115.722 kb on + strand, within Ac3H11_832at 115.722 kb on + strand, within Ac3H11_832at 115.722 kb on + strand, within Ac3H11_832at 115.723 kb on - strand, within Ac3H11_832at 115.723 kb on - strand, within Ac3H11_832at 115.723 kb on - strand, within Ac3H11_832at 115.870 kb on + strand, within Ac3H11_832at 115.870 kb on + strand, within Ac3H11_832at 115.871 kb on - strand, within Ac3H11_832at 115.871 kb on - strand, within Ac3H11_832at 115.871 kb on - strand, within Ac3H11_832at 115.872 kb on + strand, within Ac3H11_832at 115.872 kb on + strand, within Ac3H11_832at 115.872 kb on + strand, within Ac3H11_832at 115.872 kb on + strand, within Ac3H11_832at 115.872 kb on + strand, within Ac3H11_832at 115.872 kb on + strand, within Ac3H11_832at 115.872 kb on + strand, within Ac3H11_832at 115.872 kb on + strand, within Ac3H11_832at 115.872 kb on + strand, within Ac3H11_832at 115.872 kb on + strand, within Ac3H11_832at 115.872 kb on + strand, within Ac3H11_832at 115.873 kb on - strand, within Ac3H11_832at 115.873 kb on - strand, within Ac3H11_832at 115.873 kb on - strand, within Ac3H11_832at 115.873 kb on - strand, within Ac3H11_832at 115.873 kb on - strand, within Ac3H11_832at 115.873 kb on - strand, within Ac3H11_832at 115.873 kb on - strand, within Ac3H11_832at 115.873 kb on - strand, within Ac3H11_832at 115.873 kb on - strand, within Ac3H11_832at 115.873 kb on - strand, within Ac3H11_832at 115.873 kb on - strand, within Ac3H11_832at 115.873 kb on - strand, within Ac3H11_832at 115.873 kb on - strand, within Ac3H11_832at 115.873 kb on - strand, within Ac3H11_832at 115.873 kb on - strand, within Ac3H11_832at 115.873 kb on - strand, within Ac3H11_832at 115.873 kb on - strand, within Ac3H11_832at 115.905 kb on + strand, within Ac3H11_832at 115.905 kb on + strand, within Ac3H11_832at 115.906 kb on - strand, within Ac3H11_832at 115.906 kb on - strand, within Ac3H11_832at 115.906 kb on - strand, within Ac3H11_832at 115.953 kb on + strand, within Ac3H11_832at 115.953 kb on + strand, within Ac3H11_832at 115.953 kb on + strand, within Ac3H11_832at 115.954 kb on - strand, within Ac3H11_832at 115.954 kb on - strand, within Ac3H11_832at 115.954 kb on - strand, within Ac3H11_832at 115.954 kb on - strand, within Ac3H11_832at 115.954 kb on - strand, within Ac3H11_832at 115.954 kb on - strand, within Ac3H11_832at 116.244 kb on + strandat 116.244 kb on + strandat 116.244 kb on + strandat 116.245 kb on - strandat 116.245 kb on - strandat 116.245 kb on - strandat 116.245 kb on - strandat 116.308 kb on - strandat 116.330 kb on - strandat 116.346 kb on + strandat 116.405 kb on + strandat 116.405 kb on + strandat 116.405 kb on + strandat 116.406 kb on - strandat 116.406 kb on - strandat 116.406 kb on - strandat 116.406 kb on - strandat 116.406 kb on - strandat 116.506 kb on + strandat 116.507 kb on - strandat 116.523 kb on + strandat 116.523 kb on + strandat 116.523 kb on + strandat 116.524 kb on - strandat 116.524 kb on - strandat 116.524 kb on - strandat 116.588 kb on + strandat 116.588 kb on + strandat 116.588 kb on + strandat 116.588 kb on + strandat 116.589 kb on - strandat 116.589 kb on - strandat 116.589 kb on - strandat 116.589 kb on - strandat 116.589 kb on - strandat 116.627 kb on - strandat 116.627 kb on - strandat 116.678 kb on - strandat 116.683 kb on + strandat 116.683 kb on + strandat 116.683 kb on + strandat 116.683 kb on + strandat 116.684 kb on - strandat 116.684 kb on - strandat 116.684 kb on - strandat 116.840 kb on + strand, within Ac3H11_833at 116.841 kb on - strand, within Ac3H11_833at 116.841 kb on - strand, within Ac3H11_833at 117.044 kb on + strand, within Ac3H11_833at 117.044 kb on + strand, within Ac3H11_833at 117.044 kb on + strand, within Ac3H11_833at 117.044 kb on + strand, within Ac3H11_833at 117.045 kb on - strand, within Ac3H11_833at 117.083 kb on + strand, within Ac3H11_833at 117.084 kb on - strand, within Ac3H11_833

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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114,083 + Ac3H11_830 0.59 -0.2
114,107 + Ac3H11_830 0.61 -0.9
114,107 + Ac3H11_830 0.61 +0.3
114,107 + Ac3H11_830 0.61 -0.5
114,107 + Ac3H11_830 0.61 +0.2
114,108 - Ac3H11_830 0.61 -1.2
114,108 - Ac3H11_830 0.61 +1.5
114,108 - Ac3H11_830 0.61 +1.3
114,108 - Ac3H11_830 0.61 -0.9
114,108 - Ac3H11_830 0.61 +1.3
114,108 - Ac3H11_830 0.61 +0.5
114,108 - Ac3H11_830 0.61 -0.7
114,108 - Ac3H11_830 0.61 -0.5
114,527 + +0.7
114,528 - +1.2
114,584 + -0.8
114,584 + -0.5
114,585 - +0.5
114,585 - -0.4
114,585 - -0.6
114,585 - +0.2
114,585 - +0.0
114,585 - -0.2
114,840 + Ac3H11_831 0.74 -0.5
114,840 + Ac3H11_831 0.74 -1.8
114,840 + Ac3H11_831 0.74 +0.4
114,840 + Ac3H11_831 0.74 -0.1
114,840 + Ac3H11_831 0.74 +0.2
114,841 - Ac3H11_831 0.74 +0.8
114,915 + -1.6
114,915 + -0.0
114,916 - -0.2
114,916 - -0.5
115,026 - +0.2
115,026 - -0.2
115,026 - -0.2
115,365 + Ac3H11_832 0.31 -0.4
115,365 + Ac3H11_832 0.31 +0.8
115,365 + Ac3H11_832 0.31 +0.1
115,365 + Ac3H11_832 0.31 -0.3
115,365 + Ac3H11_832 0.31 +0.2
115,366 - Ac3H11_832 0.31 -1.6
115,452 + Ac3H11_832 0.38 -0.3
115,467 + Ac3H11_832 0.40 -0.4
115,722 + Ac3H11_832 0.60 -0.8
115,722 + Ac3H11_832 0.60 +0.9
115,722 + Ac3H11_832 0.60 +0.4
115,722 + Ac3H11_832 0.60 +0.7
115,722 + Ac3H11_832 0.60 -0.5
115,722 + Ac3H11_832 0.60 -1.0
115,723 - Ac3H11_832 0.60 +0.1
115,723 - Ac3H11_832 0.60 -1.2
115,723 - Ac3H11_832 0.60 -0.6
115,870 + Ac3H11_832 0.72 -0.9
115,870 + Ac3H11_832 0.72 +1.5
115,871 - Ac3H11_832 0.72 +0.5
115,871 - Ac3H11_832 0.72 -0.6
115,871 - Ac3H11_832 0.72 +0.1
115,872 + Ac3H11_832 0.72 -2.3
115,872 + Ac3H11_832 0.72 +0.5
115,872 + Ac3H11_832 0.72 -1.6
115,872 + Ac3H11_832 0.72 +0.1
115,872 + Ac3H11_832 0.72 +1.0
115,872 + Ac3H11_832 0.72 -0.2
115,872 + Ac3H11_832 0.72 +2.1
115,872 + Ac3H11_832 0.72 +0.5
115,872 + Ac3H11_832 0.72 -0.9
115,872 + Ac3H11_832 0.72 -0.2
115,872 + Ac3H11_832 0.72 -2.5
115,873 - Ac3H11_832 0.72 -1.5
115,873 - Ac3H11_832 0.72 +0.6
115,873 - Ac3H11_832 0.72 -0.6
115,873 - Ac3H11_832 0.72 +1.2
115,873 - Ac3H11_832 0.72 -0.4
115,873 - Ac3H11_832 0.72 +0.8
115,873 - Ac3H11_832 0.72 +0.3
115,873 - Ac3H11_832 0.72 +0.5
115,873 - Ac3H11_832 0.72 +0.6
115,873 - Ac3H11_832 0.72 -0.1
115,873 - Ac3H11_832 0.72 -0.4
115,873 - Ac3H11_832 0.72 +0.3
115,873 - Ac3H11_832 0.72 -1.2
115,873 - Ac3H11_832 0.72 +2.2
115,873 - Ac3H11_832 0.72 +1.0
115,873 - Ac3H11_832 0.72 +1.4
115,873 - Ac3H11_832 0.72 +0.4
115,905 + Ac3H11_832 0.75 -0.6
115,905 + Ac3H11_832 0.75 +0.3
115,906 - Ac3H11_832 0.75 +0.0
115,906 - Ac3H11_832 0.75 +0.8
115,906 - Ac3H11_832 0.75 +0.5
115,953 + Ac3H11_832 0.79 -0.5
115,953 + Ac3H11_832 0.79 +0.1
115,953 + Ac3H11_832 0.79 -0.6
115,954 - Ac3H11_832 0.79 -0.5
115,954 - Ac3H11_832 0.79 -0.7
115,954 - Ac3H11_832 0.79 +0.3
115,954 - Ac3H11_832 0.79 +0.0
115,954 - Ac3H11_832 0.79 -0.6
115,954 - Ac3H11_832 0.79 +1.0
116,244 + -1.2
116,244 + +0.1
116,244 + +1.0
116,245 - -0.1
116,245 - +0.9
116,245 - +0.0
116,245 - -1.1
116,308 - +0.6
116,330 - +0.6
116,346 + +0.2
116,405 + +0.6
116,405 + +0.1
116,405 + -0.6
116,406 - -0.2
116,406 - +0.3
116,406 - +1.4
116,406 - +1.0
116,406 - +0.1
116,506 + +0.8
116,507 - +0.3
116,523 + +1.0
116,523 + -0.3
116,523 + +1.4
116,524 - +0.7
116,524 - -0.1
116,524 - -1.4
116,588 + -1.3
116,588 + -0.5
116,588 + +0.4
116,588 + +0.4
116,589 - -0.2
116,589 - +0.2
116,589 - +1.2
116,589 - +0.2
116,589 - +0.2
116,627 - -0.1
116,627 - -0.1
116,678 - -0.5
116,683 + +1.1
116,683 + -0.4
116,683 + -1.1
116,683 + +0.1
116,684 - -0.4
116,684 - +0.6
116,684 - +1.4
116,840 + Ac3H11_833 0.15 +0.7
116,841 - Ac3H11_833 0.16 +0.6
116,841 - Ac3H11_833 0.16 -0.0
117,044 + Ac3H11_833 0.41 +1.1
117,044 + Ac3H11_833 0.41 +1.0
117,044 + Ac3H11_833 0.41 -0.3
117,044 + Ac3H11_833 0.41 -0.6
117,045 - Ac3H11_833 0.41 +0.9
117,083 + Ac3H11_833 0.46 -0.3
117,084 - Ac3H11_833 0.46 -0.0

Or see this region's nucleotide sequence