Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3427

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3426 and Ac3H11_3427 are separated by 224 nucleotidesAc3H11_3427 and Ac3H11_3428 overlap by 4 nucleotidesAc3H11_3428 and Ac3H11_3429 are separated by 17 nucleotides Ac3H11_3426 - hypothetical protein, at 106,609 to 107,262 _3426 Ac3H11_3427 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 107,487 to 111,218 _3427 Ac3H11_3428 - Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16), at 111,215 to 111,721 _3428 Ac3H11_3429 - Extracellular ligand-binding receptor, at 111,739 to 112,896 _3429 Position (kb) 107 108 109 110 111 112Strain fitness (log2 ratio) -2 -1 0 1 2at 106.634 kb on + strandat 106.634 kb on + strandat 106.634 kb on + strandat 106.635 kb on - strandat 106.721 kb on + strand, within Ac3H11_3426at 106.730 kb on + strand, within Ac3H11_3426at 106.754 kb on + strand, within Ac3H11_3426at 106.754 kb on + strand, within Ac3H11_3426at 106.754 kb on + strand, within Ac3H11_3426at 106.755 kb on - strand, within Ac3H11_3426at 106.755 kb on - strand, within Ac3H11_3426at 106.755 kb on - strand, within Ac3H11_3426at 106.931 kb on + strand, within Ac3H11_3426at 106.932 kb on - strand, within Ac3H11_3426at 107.111 kb on + strand, within Ac3H11_3426at 107.111 kb on + strand, within Ac3H11_3426at 107.111 kb on + strand, within Ac3H11_3426at 107.111 kb on + strand, within Ac3H11_3426at 107.111 kb on + strand, within Ac3H11_3426at 107.112 kb on - strand, within Ac3H11_3426at 107.112 kb on - strand, within Ac3H11_3426at 107.112 kb on - strand, within Ac3H11_3426at 107.112 kb on - strand, within Ac3H11_3426at 107.360 kb on - strandat 107.402 kb on + strandat 107.402 kb on + strandat 107.403 kb on - strandat 107.403 kb on - strandat 107.403 kb on - strandat 107.489 kb on - strandat 107.564 kb on - strandat 107.564 kb on - strandat 107.576 kb on + strandat 107.576 kb on + strandat 107.576 kb on + strandat 107.576 kb on + strandat 107.576 kb on + strandat 107.577 kb on - strandat 107.578 kb on + strandat 107.578 kb on + strandat 107.578 kb on + strandat 107.579 kb on - strandat 107.926 kb on + strand, within Ac3H11_3427at 107.926 kb on + strand, within Ac3H11_3427at 107.927 kb on - strand, within Ac3H11_3427at 108.037 kb on + strand, within Ac3H11_3427at 108.043 kb on + strand, within Ac3H11_3427at 108.043 kb on + strand, within Ac3H11_3427at 108.043 kb on + strand, within Ac3H11_3427at 108.043 kb on + strand, within Ac3H11_3427at 108.043 kb on + strand, within Ac3H11_3427at 108.043 kb on + strand, within Ac3H11_3427at 108.044 kb on - strand, within Ac3H11_3427at 108.214 kb on + strand, within Ac3H11_3427at 108.376 kb on + strand, within Ac3H11_3427at 108.377 kb on - strand, within Ac3H11_3427at 108.382 kb on + strand, within Ac3H11_3427at 108.383 kb on - strand, within Ac3H11_3427at 108.427 kb on + strand, within Ac3H11_3427at 108.428 kb on - strand, within Ac3H11_3427at 108.428 kb on - strand, within Ac3H11_3427at 108.442 kb on + strand, within Ac3H11_3427at 108.550 kb on + strand, within Ac3H11_3427at 108.551 kb on - strand, within Ac3H11_3427at 108.679 kb on + strand, within Ac3H11_3427at 108.679 kb on + strand, within Ac3H11_3427at 109.120 kb on + strand, within Ac3H11_3427at 109.375 kb on + strand, within Ac3H11_3427at 109.376 kb on - strand, within Ac3H11_3427at 109.384 kb on + strand, within Ac3H11_3427at 109.385 kb on - strand, within Ac3H11_3427at 109.385 kb on - strand, within Ac3H11_3427at 109.567 kb on + strand, within Ac3H11_3427at 109.567 kb on + strand, within Ac3H11_3427at 109.567 kb on + strand, within Ac3H11_3427at 109.567 kb on + strand, within Ac3H11_3427at 109.568 kb on - strand, within Ac3H11_3427at 109.568 kb on - strand, within Ac3H11_3427at 109.568 kb on - strand, within Ac3H11_3427at 109.669 kb on + strand, within Ac3H11_3427at 109.709 kb on - strand, within Ac3H11_3427at 109.778 kb on - strand, within Ac3H11_3427at 109.778 kb on - strand, within Ac3H11_3427at 110.176 kb on + strand, within Ac3H11_3427at 110.176 kb on + strand, within Ac3H11_3427at 110.176 kb on + strand, within Ac3H11_3427at 110.176 kb on + strand, within Ac3H11_3427at 110.177 kb on - strand, within Ac3H11_3427at 110.177 kb on - strand, within Ac3H11_3427at 110.177 kb on - strand, within Ac3H11_3427at 110.177 kb on - strand, within Ac3H11_3427at 110.177 kb on - strand, within Ac3H11_3427at 110.278 kb on - strand, within Ac3H11_3427at 110.510 kb on - strand, within Ac3H11_3427at 110.510 kb on - strand, within Ac3H11_3427at 110.633 kb on - strand, within Ac3H11_3427at 111.054 kb on + strandat 111.054 kb on + strandat 111.054 kb on + strandat 111.055 kb on - strandat 111.317 kb on + strand, within Ac3H11_3428at 111.591 kb on + strand, within Ac3H11_3428at 111.591 kb on + strand, within Ac3H11_3428at 111.591 kb on + strand, within Ac3H11_3428at 111.592 kb on - strand, within Ac3H11_3428at 111.592 kb on - strand, within Ac3H11_3428at 111.767 kb on + strandat 111.767 kb on + strandat 111.767 kb on + strandat 111.767 kb on + strandat 111.768 kb on - strandat 111.768 kb on - strandat 111.768 kb on - strandat 111.768 kb on - strandat 111.815 kb on + strandat 111.816 kb on - strandat 111.816 kb on - strandat 111.938 kb on + strand, within Ac3H11_3429at 111.938 kb on + strand, within Ac3H11_3429at 111.939 kb on - strand, within Ac3H11_3429at 111.939 kb on - strand, within Ac3H11_3429at 111.939 kb on - strand, within Ac3H11_3429at 111.956 kb on + strand, within Ac3H11_3429at 111.956 kb on + strand, within Ac3H11_3429at 111.956 kb on + strand, within Ac3H11_3429at 111.956 kb on + strand, within Ac3H11_3429at 111.957 kb on - strand, within Ac3H11_3429at 111.957 kb on - strand, within Ac3H11_3429at 111.998 kb on + strand, within Ac3H11_3429at 112.111 kb on - strand, within Ac3H11_3429at 112.127 kb on + strand, within Ac3H11_3429at 112.127 kb on + strand, within Ac3H11_3429

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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106,634 + -0.6
106,634 + -0.4
106,634 + +0.2
106,635 - +1.1
106,721 + Ac3H11_3426 0.17 +0.8
106,730 + Ac3H11_3426 0.19 -0.1
106,754 + Ac3H11_3426 0.22 -0.2
106,754 + Ac3H11_3426 0.22 -0.2
106,754 + Ac3H11_3426 0.22 -0.0
106,755 - Ac3H11_3426 0.22 -0.4
106,755 - Ac3H11_3426 0.22 -0.6
106,755 - Ac3H11_3426 0.22 -0.4
106,931 + Ac3H11_3426 0.49 -0.9
106,932 - Ac3H11_3426 0.49 -0.8
107,111 + Ac3H11_3426 0.77 +0.1
107,111 + Ac3H11_3426 0.77 +0.2
107,111 + Ac3H11_3426 0.77 +0.0
107,111 + Ac3H11_3426 0.77 -2.1
107,111 + Ac3H11_3426 0.77 -0.2
107,112 - Ac3H11_3426 0.77 -0.4
107,112 - Ac3H11_3426 0.77 +1.9
107,112 - Ac3H11_3426 0.77 -0.4
107,112 - Ac3H11_3426 0.77 -0.0
107,360 - -1.1
107,402 + +0.0
107,402 + -0.4
107,403 - +0.0
107,403 - -0.1
107,403 - -1.1
107,489 - +0.4
107,564 - -0.1
107,564 - -0.5
107,576 + +0.5
107,576 + -0.7
107,576 + -0.2
107,576 + -1.0
107,576 + +1.2
107,577 - +0.9
107,578 + -1.2
107,578 + -0.0
107,578 + -0.5
107,579 - -0.5
107,926 + Ac3H11_3427 0.12 -0.5
107,926 + Ac3H11_3427 0.12 -1.0
107,927 - Ac3H11_3427 0.12 +0.8
108,037 + Ac3H11_3427 0.15 -1.1
108,043 + Ac3H11_3427 0.15 -0.1
108,043 + Ac3H11_3427 0.15 +0.6
108,043 + Ac3H11_3427 0.15 +0.5
108,043 + Ac3H11_3427 0.15 +0.3
108,043 + Ac3H11_3427 0.15 -0.1
108,043 + Ac3H11_3427 0.15 +0.2
108,044 - Ac3H11_3427 0.15 +1.2
108,214 + Ac3H11_3427 0.19 +1.0
108,376 + Ac3H11_3427 0.24 +0.8
108,377 - Ac3H11_3427 0.24 +0.8
108,382 + Ac3H11_3427 0.24 -0.3
108,383 - Ac3H11_3427 0.24 -1.2
108,427 + Ac3H11_3427 0.25 -0.5
108,428 - Ac3H11_3427 0.25 +0.1
108,428 - Ac3H11_3427 0.25 -0.4
108,442 + Ac3H11_3427 0.26 +0.5
108,550 + Ac3H11_3427 0.28 +0.2
108,551 - Ac3H11_3427 0.29 +0.3
108,679 + Ac3H11_3427 0.32 -1.0
108,679 + Ac3H11_3427 0.32 -0.8
109,120 + Ac3H11_3427 0.44 -0.4
109,375 + Ac3H11_3427 0.51 +1.0
109,376 - Ac3H11_3427 0.51 -0.4
109,384 + Ac3H11_3427 0.51 -0.1
109,385 - Ac3H11_3427 0.51 -0.1
109,385 - Ac3H11_3427 0.51 -0.5
109,567 + Ac3H11_3427 0.56 -1.1
109,567 + Ac3H11_3427 0.56 +1.8
109,567 + Ac3H11_3427 0.56 +0.1
109,567 + Ac3H11_3427 0.56 -0.6
109,568 - Ac3H11_3427 0.56 -0.1
109,568 - Ac3H11_3427 0.56 +0.6
109,568 - Ac3H11_3427 0.56 +1.3
109,669 + Ac3H11_3427 0.58 +0.5
109,709 - Ac3H11_3427 0.60 +1.0
109,778 - Ac3H11_3427 0.61 -0.2
109,778 - Ac3H11_3427 0.61 -0.1
110,176 + Ac3H11_3427 0.72 +0.8
110,176 + Ac3H11_3427 0.72 -0.3
110,176 + Ac3H11_3427 0.72 +0.3
110,176 + Ac3H11_3427 0.72 +1.3
110,177 - Ac3H11_3427 0.72 -1.4
110,177 - Ac3H11_3427 0.72 +1.9
110,177 - Ac3H11_3427 0.72 -0.1
110,177 - Ac3H11_3427 0.72 -0.3
110,177 - Ac3H11_3427 0.72 -1.1
110,278 - Ac3H11_3427 0.75 +1.8
110,510 - Ac3H11_3427 0.81 +1.2
110,510 - Ac3H11_3427 0.81 -0.1
110,633 - Ac3H11_3427 0.84 +1.1
111,054 + +0.9
111,054 + -0.1
111,054 + -0.0
111,055 - -0.5
111,317 + Ac3H11_3428 0.20 +1.1
111,591 + Ac3H11_3428 0.74 +0.4
111,591 + Ac3H11_3428 0.74 -0.6
111,591 + Ac3H11_3428 0.74 +1.1
111,592 - Ac3H11_3428 0.74 +0.9
111,592 - Ac3H11_3428 0.74 -0.2
111,767 + -0.6
111,767 + +0.6
111,767 + +0.2
111,767 + +1.2
111,768 - -0.9
111,768 - -1.5
111,768 - +0.1
111,768 - -0.7
111,815 + +0.8
111,816 - +1.4
111,816 - +0.3
111,938 + Ac3H11_3429 0.17 -0.7
111,938 + Ac3H11_3429 0.17 -0.1
111,939 - Ac3H11_3429 0.17 -0.9
111,939 - Ac3H11_3429 0.17 -1.6
111,939 - Ac3H11_3429 0.17 +0.8
111,956 + Ac3H11_3429 0.19 -0.2
111,956 + Ac3H11_3429 0.19 +1.9
111,956 + Ac3H11_3429 0.19 +0.1
111,956 + Ac3H11_3429 0.19 -1.4
111,957 - Ac3H11_3429 0.19 +0.1
111,957 - Ac3H11_3429 0.19 +1.9
111,998 + Ac3H11_3429 0.22 -0.2
112,111 - Ac3H11_3429 0.32 -0.5
112,127 + Ac3H11_3429 0.34 +0.6
112,127 + Ac3H11_3429 0.34 +0.2

Or see this region's nucleotide sequence