Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2810

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2809 and Ac3H11_2810 overlap by 4 nucleotidesAc3H11_2810 and Ac3H11_2811 overlap by 4 nucleotidesAc3H11_2811 and Ac3H11_2812 are separated by 128 nucleotides Ac3H11_2809 - IncF plasmid conjugative transfer pilus assembly protein TraC, at 1,112,242 to 1,114,824 _2809 Ac3H11_2810 - hypothetical protein, at 1,114,821 to 1,115,174 _2810 Ac3H11_2811 - Conjugative signal peptidase TrhF, at 1,115,171 to 1,115,758 _2811 Ac3H11_2812 - hypothetical protein, at 1,115,887 to 1,116,177 _2812 Ac3H11_2813 - IncF plasmid conjugative transfer pilus assembly protein TraW, at 1,116,174 to 1,116,803 _2813 Position (kb) 1114 1115 1116Strain fitness (log2 ratio) -3 -2 -1 0 1at 1113.967 kb on - strand, within Ac3H11_2809at 1113.967 kb on - strand, within Ac3H11_2809at 1113.985 kb on + strand, within Ac3H11_2809at 1113.985 kb on + strand, within Ac3H11_2809at 1113.985 kb on + strand, within Ac3H11_2809at 1113.985 kb on + strand, within Ac3H11_2809at 1114.303 kb on + strand, within Ac3H11_2809at 1114.303 kb on + strand, within Ac3H11_2809at 1114.304 kb on - strand, within Ac3H11_2809at 1114.472 kb on - strand, within Ac3H11_2809at 1114.474 kb on + strand, within Ac3H11_2809at 1114.648 kb on + strandat 1114.944 kb on + strand, within Ac3H11_2810at 1115.162 kb on - strandat 1115.162 kb on - strandat 1115.276 kb on + strand, within Ac3H11_2811at 1115.282 kb on + strand, within Ac3H11_2811at 1115.283 kb on - strand, within Ac3H11_2811at 1115.283 kb on - strand, within Ac3H11_2811at 1115.474 kb on + strand, within Ac3H11_2811at 1115.654 kb on + strand, within Ac3H11_2811at 1115.658 kb on - strand, within Ac3H11_2811at 1115.658 kb on - strand, within Ac3H11_2811at 1115.992 kb on + strand, within Ac3H11_2812

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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1,113,967 - Ac3H11_2809 0.67 -0.1
1,113,967 - Ac3H11_2809 0.67 -1.2
1,113,985 + Ac3H11_2809 0.67 +1.7
1,113,985 + Ac3H11_2809 0.67 -1.3
1,113,985 + Ac3H11_2809 0.67 -0.4
1,113,985 + Ac3H11_2809 0.67 +1.1
1,114,303 + Ac3H11_2809 0.80 +0.4
1,114,303 + Ac3H11_2809 0.80 -1.8
1,114,304 - Ac3H11_2809 0.80 +0.1
1,114,472 - Ac3H11_2809 0.86 -0.1
1,114,474 + Ac3H11_2809 0.86 -0.6
1,114,648 + -1.0
1,114,944 + Ac3H11_2810 0.35 +0.0
1,115,162 - -0.4
1,115,162 - -2.9
1,115,276 + Ac3H11_2811 0.18 -0.5
1,115,282 + Ac3H11_2811 0.19 +0.1
1,115,283 - Ac3H11_2811 0.19 -2.2
1,115,283 - Ac3H11_2811 0.19 -0.1
1,115,474 + Ac3H11_2811 0.52 -0.1
1,115,654 + Ac3H11_2811 0.82 -0.1
1,115,658 - Ac3H11_2811 0.83 -0.3
1,115,658 - Ac3H11_2811 0.83 +0.1
1,115,992 + Ac3H11_2812 0.36 +1.7

Or see this region's nucleotide sequence