Experiment: Cobalt chloride 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2809 and Ac3H11_2810 overlap by 4 nucleotides Ac3H11_2810 and Ac3H11_2811 overlap by 4 nucleotides Ac3H11_2811 and Ac3H11_2812 are separated by 128 nucleotides
Ac3H11_2809 - IncF plasmid conjugative transfer pilus assembly protein TraC, at 1,112,242 to 1,114,824
_2809
Ac3H11_2810 - hypothetical protein, at 1,114,821 to 1,115,174
_2810
Ac3H11_2811 - Conjugative signal peptidase TrhF, at 1,115,171 to 1,115,758
_2811
Ac3H11_2812 - hypothetical protein, at 1,115,887 to 1,116,177
_2812
Ac3H11_2813 - IncF plasmid conjugative transfer pilus assembly protein TraW, at 1,116,174 to 1,116,803
_2813
Position (kb)
1114
1115
1116 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1113.967 kb on - strand, within Ac3H11_2809 at 1113.967 kb on - strand, within Ac3H11_2809 at 1113.985 kb on + strand, within Ac3H11_2809 at 1113.985 kb on + strand, within Ac3H11_2809 at 1113.985 kb on + strand, within Ac3H11_2809 at 1113.985 kb on + strand, within Ac3H11_2809 at 1114.303 kb on + strand, within Ac3H11_2809 at 1114.303 kb on + strand, within Ac3H11_2809 at 1114.304 kb on - strand, within Ac3H11_2809 at 1114.472 kb on - strand, within Ac3H11_2809 at 1114.474 kb on + strand, within Ac3H11_2809 at 1114.648 kb on + strand at 1114.944 kb on + strand, within Ac3H11_2810 at 1115.162 kb on - strand at 1115.162 kb on - strand at 1115.276 kb on + strand, within Ac3H11_2811 at 1115.282 kb on + strand, within Ac3H11_2811 at 1115.283 kb on - strand, within Ac3H11_2811 at 1115.283 kb on - strand, within Ac3H11_2811 at 1115.474 kb on + strand, within Ac3H11_2811 at 1115.654 kb on + strand, within Ac3H11_2811 at 1115.658 kb on - strand, within Ac3H11_2811 at 1115.658 kb on - strand, within Ac3H11_2811 at 1115.992 kb on + strand, within Ac3H11_2812
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM remove 1,113,967 - Ac3H11_2809 0.67 -0.1 1,113,967 - Ac3H11_2809 0.67 -1.2 1,113,985 + Ac3H11_2809 0.67 +1.7 1,113,985 + Ac3H11_2809 0.67 -1.3 1,113,985 + Ac3H11_2809 0.67 -0.4 1,113,985 + Ac3H11_2809 0.67 +1.1 1,114,303 + Ac3H11_2809 0.80 +0.4 1,114,303 + Ac3H11_2809 0.80 -1.8 1,114,304 - Ac3H11_2809 0.80 +0.1 1,114,472 - Ac3H11_2809 0.86 -0.1 1,114,474 + Ac3H11_2809 0.86 -0.6 1,114,648 + -1.0 1,114,944 + Ac3H11_2810 0.35 +0.0 1,115,162 - -0.4 1,115,162 - -2.9 1,115,276 + Ac3H11_2811 0.18 -0.5 1,115,282 + Ac3H11_2811 0.19 +0.1 1,115,283 - Ac3H11_2811 0.19 -2.2 1,115,283 - Ac3H11_2811 0.19 -0.1 1,115,474 + Ac3H11_2811 0.52 -0.1 1,115,654 + Ac3H11_2811 0.82 -0.1 1,115,658 - Ac3H11_2811 0.83 -0.3 1,115,658 - Ac3H11_2811 0.83 +0.1 1,115,992 + Ac3H11_2812 0.36 +1.7
Or see this region's nucleotide sequence