Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1222

Experiment: Cobalt chloride 0.32 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_1220 and Ac3H11_1221 are separated by 20 nucleotidesAc3H11_1221 and Ac3H11_1222 are separated by 14 nucleotidesAc3H11_1222 and Ac3H11_1223 are separated by 6 nucleotidesAc3H11_1223 and Ac3H11_1224 are separated by 18 nucleotides Ac3H11_1220 - FIG097052: Sugar transporter, at 38,965 to 40,248 _1220 Ac3H11_1221 - FIG002577: Putative lipoprotein precursor, at 40,269 to 40,808 _1221 Ac3H11_1222 - Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-), at 40,823 to 41,587 _1222 Ac3H11_1223 - FIG002994: Putative transcriptional regulator, at 41,594 to 42,049 _1223 Ac3H11_1224 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27), at 42,068 to 42,973 _1224 Position (kb) 40 41 42Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 40.022 kb on - strand, within Ac3H11_1220at 40.022 kb on - strand, within Ac3H11_1220at 40.105 kb on + strand, within Ac3H11_1220at 40.105 kb on + strand, within Ac3H11_1220at 40.105 kb on + strand, within Ac3H11_1220at 40.105 kb on + strand, within Ac3H11_1220at 40.156 kb on + strandat 40.156 kb on + strandat 40.204 kb on + strandat 40.204 kb on + strandat 40.205 kb on - strandat 40.205 kb on - strandat 40.386 kb on + strand, within Ac3H11_1221at 40.386 kb on + strand, within Ac3H11_1221at 40.387 kb on - strand, within Ac3H11_1221at 40.387 kb on - strand, within Ac3H11_1221at 40.515 kb on + strand, within Ac3H11_1221at 40.515 kb on + strand, within Ac3H11_1221at 40.516 kb on - strand, within Ac3H11_1221at 40.516 kb on - strand, within Ac3H11_1221at 40.647 kb on + strand, within Ac3H11_1221at 40.648 kb on - strand, within Ac3H11_1221at 40.648 kb on - strand, within Ac3H11_1221at 40.707 kb on + strand, within Ac3H11_1221at 40.707 kb on + strand, within Ac3H11_1221at 40.708 kb on - strand, within Ac3H11_1221at 40.708 kb on - strand, within Ac3H11_1221at 40.708 kb on - strand, within Ac3H11_1221at 40.708 kb on - strand, within Ac3H11_1221at 40.708 kb on - strand, within Ac3H11_1221at 41.072 kb on + strand, within Ac3H11_1222at 41.072 kb on + strand, within Ac3H11_1222at 41.072 kb on + strand, within Ac3H11_1222at 41.072 kb on + strand, within Ac3H11_1222at 41.085 kb on - strand, within Ac3H11_1222at 41.087 kb on + strand, within Ac3H11_1222at 41.088 kb on - strand, within Ac3H11_1222at 41.150 kb on + strand, within Ac3H11_1222at 41.150 kb on + strand, within Ac3H11_1222at 41.290 kb on + strand, within Ac3H11_1222at 41.328 kb on - strand, within Ac3H11_1222at 41.510 kb on - strand, within Ac3H11_1222at 41.510 kb on - strand, within Ac3H11_1222at 41.510 kb on - strand, within Ac3H11_1222at 41.552 kb on + strandat 41.552 kb on + strandat 41.606 kb on + strandat 41.606 kb on + strandat 41.679 kb on + strand, within Ac3H11_1223at 41.679 kb on + strand, within Ac3H11_1223at 41.680 kb on - strand, within Ac3H11_1223at 41.680 kb on - strand, within Ac3H11_1223at 41.699 kb on + strand, within Ac3H11_1223at 41.700 kb on - strand, within Ac3H11_1223at 41.748 kb on + strand, within Ac3H11_1223at 41.748 kb on + strand, within Ac3H11_1223at 41.748 kb on + strand, within Ac3H11_1223at 41.963 kb on + strand, within Ac3H11_1223at 41.964 kb on - strand, within Ac3H11_1223at 41.987 kb on + strand, within Ac3H11_1223at 42.122 kb on + strandat 42.123 kb on - strandat 42.171 kb on + strand, within Ac3H11_1224at 42.172 kb on - strand, within Ac3H11_1224at 42.192 kb on + strand, within Ac3H11_1224at 42.232 kb on - strand, within Ac3H11_1224at 42.254 kb on + strand, within Ac3H11_1224at 42.381 kb on + strand, within Ac3H11_1224at 42.381 kb on + strand, within Ac3H11_1224at 42.382 kb on - strand, within Ac3H11_1224at 42.382 kb on - strand, within Ac3H11_1224at 42.444 kb on + strand, within Ac3H11_1224at 42.444 kb on + strand, within Ac3H11_1224at 42.445 kb on - strand, within Ac3H11_1224at 42.445 kb on - strand, within Ac3H11_1224at 42.578 kb on + strand, within Ac3H11_1224at 42.578 kb on + strand, within Ac3H11_1224at 42.579 kb on - strand, within Ac3H11_1224

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
remove
40,022 - Ac3H11_1220 0.82 +0.9
40,022 - Ac3H11_1220 0.82 -0.4
40,105 + Ac3H11_1220 0.89 -0.1
40,105 + Ac3H11_1220 0.89 +0.2
40,105 + Ac3H11_1220 0.89 -0.5
40,105 + Ac3H11_1220 0.89 +1.0
40,156 + -0.8
40,156 + -0.5
40,204 + -4.0
40,204 + -0.8
40,205 - -1.1
40,205 - -0.7
40,386 + Ac3H11_1221 0.22 -0.8
40,386 + Ac3H11_1221 0.22 +0.6
40,387 - Ac3H11_1221 0.22 -0.5
40,387 - Ac3H11_1221 0.22 -0.7
40,515 + Ac3H11_1221 0.46 -0.5
40,515 + Ac3H11_1221 0.46 +0.8
40,516 - Ac3H11_1221 0.46 -0.9
40,516 - Ac3H11_1221 0.46 -0.4
40,647 + Ac3H11_1221 0.70 +0.1
40,648 - Ac3H11_1221 0.70 -1.2
40,648 - Ac3H11_1221 0.70 -0.4
40,707 + Ac3H11_1221 0.81 -0.3
40,707 + Ac3H11_1221 0.81 -0.3
40,708 - Ac3H11_1221 0.81 -0.0
40,708 - Ac3H11_1221 0.81 -1.0
40,708 - Ac3H11_1221 0.81 +0.4
40,708 - Ac3H11_1221 0.81 +0.5
40,708 - Ac3H11_1221 0.81 +1.2
41,072 + Ac3H11_1222 0.33 +0.4
41,072 + Ac3H11_1222 0.33 +1.2
41,072 + Ac3H11_1222 0.33 -0.1
41,072 + Ac3H11_1222 0.33 +0.1
41,085 - Ac3H11_1222 0.34 -0.7
41,087 + Ac3H11_1222 0.35 +0.3
41,088 - Ac3H11_1222 0.35 +0.2
41,150 + Ac3H11_1222 0.43 +0.8
41,150 + Ac3H11_1222 0.43 -0.5
41,290 + Ac3H11_1222 0.61 +0.1
41,328 - Ac3H11_1222 0.66 -0.9
41,510 - Ac3H11_1222 0.90 +0.6
41,510 - Ac3H11_1222 0.90 +0.2
41,510 - Ac3H11_1222 0.90 +0.4
41,552 + +0.3
41,552 + -1.8
41,606 + -2.2
41,606 + +0.8
41,679 + Ac3H11_1223 0.19 +1.0
41,679 + Ac3H11_1223 0.19 -0.6
41,680 - Ac3H11_1223 0.19 -0.0
41,680 - Ac3H11_1223 0.19 -2.9
41,699 + Ac3H11_1223 0.23 +0.7
41,700 - Ac3H11_1223 0.23 +0.7
41,748 + Ac3H11_1223 0.34 +0.2
41,748 + Ac3H11_1223 0.34 +1.3
41,748 + Ac3H11_1223 0.34 -0.4
41,963 + Ac3H11_1223 0.81 +1.3
41,964 - Ac3H11_1223 0.81 -0.5
41,987 + Ac3H11_1223 0.86 +1.3
42,122 + -0.4
42,123 - +0.7
42,171 + Ac3H11_1224 0.11 -0.3
42,172 - Ac3H11_1224 0.11 -1.6
42,192 + Ac3H11_1224 0.14 -0.5
42,232 - Ac3H11_1224 0.18 +0.4
42,254 + Ac3H11_1224 0.21 -0.1
42,381 + Ac3H11_1224 0.35 +0.3
42,381 + Ac3H11_1224 0.35 -1.7
42,382 - Ac3H11_1224 0.35 +2.4
42,382 - Ac3H11_1224 0.35 -1.0
42,444 + Ac3H11_1224 0.42 +0.1
42,444 + Ac3H11_1224 0.42 -2.5
42,445 - Ac3H11_1224 0.42 -0.6
42,445 - Ac3H11_1224 0.42 +0.7
42,578 + Ac3H11_1224 0.56 -0.1
42,578 + Ac3H11_1224 0.56 -0.7
42,579 - Ac3H11_1224 0.56 -0.6

Or see this region's nucleotide sequence