Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1209

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1208 and Ac3H11_1209 are separated by 89 nucleotidesAc3H11_1209 and Ac3H11_1210 are separated by 118 nucleotidesAc3H11_1210 and Ac3H11_1211 overlap by 4 nucleotides Ac3H11_1208 - FIG005080: Possible exported protein, at 18,872 to 23,020 _1208 Ac3H11_1209 - Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42), at 23,110 to 25,875 _1209 Ac3H11_1210 - transcriptional regulator, TetR family, at 25,994 to 26,725 _1210 Ac3H11_1211 - Outer membrane protein assembly factor YaeT precursor, at 26,722 to 28,170 _1211 Position (kb) 23 24 25 26Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 22.232 kb on + strand, within Ac3H11_1208at 22.232 kb on + strand, within Ac3H11_1208at 22.232 kb on + strand, within Ac3H11_1208at 22.232 kb on + strand, within Ac3H11_1208at 22.232 kb on + strand, within Ac3H11_1208at 22.232 kb on + strand, within Ac3H11_1208at 22.233 kb on - strand, within Ac3H11_1208at 22.233 kb on - strand, within Ac3H11_1208at 22.233 kb on - strand, within Ac3H11_1208at 22.233 kb on - strand, within Ac3H11_1208at 22.605 kb on + strand, within Ac3H11_1208at 22.605 kb on + strand, within Ac3H11_1208at 22.605 kb on + strand, within Ac3H11_1208at 22.605 kb on + strand, within Ac3H11_1208at 22.605 kb on + strand, within Ac3H11_1208at 22.605 kb on + strand, within Ac3H11_1208at 22.606 kb on - strandat 22.606 kb on - strandat 22.606 kb on - strandat 22.606 kb on - strandat 22.656 kb on + strandat 22.656 kb on + strandat 22.656 kb on + strandat 22.656 kb on + strandat 22.656 kb on + strandat 22.656 kb on + strandat 22.656 kb on + strandat 22.656 kb on + strandat 22.656 kb on + strandat 22.656 kb on + strandat 22.656 kb on + strandat 22.656 kb on + strandat 22.657 kb on - strandat 22.657 kb on - strandat 22.657 kb on - strandat 22.657 kb on - strandat 22.657 kb on - strandat 22.657 kb on - strandat 22.657 kb on - strandat 22.657 kb on - strandat 22.657 kb on - strandat 22.657 kb on - strandat 22.657 kb on - strandat 22.979 kb on + strandat 22.979 kb on + strandat 22.980 kb on - strandat 23.045 kb on + strandat 23.045 kb on + strandat 23.045 kb on + strandat 23.045 kb on + strandat 23.074 kb on + strandat 23.074 kb on + strandat 23.075 kb on - strandat 23.584 kb on + strand, within Ac3H11_1209at 23.584 kb on + strand, within Ac3H11_1209at 23.590 kb on + strand, within Ac3H11_1209at 23.591 kb on - strand, within Ac3H11_1209at 23.680 kb on + strand, within Ac3H11_1209at 23.680 kb on + strand, within Ac3H11_1209at 23.680 kb on + strand, within Ac3H11_1209at 23.680 kb on + strand, within Ac3H11_1209at 23.680 kb on + strand, within Ac3H11_1209at 23.680 kb on + strand, within Ac3H11_1209at 23.794 kb on + strand, within Ac3H11_1209at 23.794 kb on + strand, within Ac3H11_1209at 23.794 kb on + strand, within Ac3H11_1209at 23.794 kb on + strand, within Ac3H11_1209at 23.794 kb on + strand, within Ac3H11_1209at 23.795 kb on - strand, within Ac3H11_1209at 24.205 kb on + strand, within Ac3H11_1209at 24.205 kb on + strand, within Ac3H11_1209at 24.205 kb on + strand, within Ac3H11_1209at 24.205 kb on + strand, within Ac3H11_1209at 24.205 kb on + strand, within Ac3H11_1209at 24.205 kb on + strand, within Ac3H11_1209at 24.685 kb on + strand, within Ac3H11_1209at 24.685 kb on + strand, within Ac3H11_1209at 24.685 kb on + strand, within Ac3H11_1209at 24.685 kb on + strand, within Ac3H11_1209at 24.685 kb on + strand, within Ac3H11_1209at 24.686 kb on - strand, within Ac3H11_1209at 24.766 kb on + strand, within Ac3H11_1209at 24.767 kb on - strand, within Ac3H11_1209at 25.112 kb on - strand, within Ac3H11_1209at 25.142 kb on - strand, within Ac3H11_1209at 25.268 kb on - strand, within Ac3H11_1209at 25.333 kb on + strand, within Ac3H11_1209at 25.334 kb on - strand, within Ac3H11_1209at 25.343 kb on - strand, within Ac3H11_1209at 25.343 kb on - strand, within Ac3H11_1209at 25.873 kb on + strandat 25.874 kb on - strandat 25.982 kb on + strandat 25.983 kb on - strandat 26.201 kb on + strand, within Ac3H11_1210at 26.201 kb on + strand, within Ac3H11_1210at 26.201 kb on + strand, within Ac3H11_1210at 26.201 kb on + strand, within Ac3H11_1210at 26.216 kb on + strand, within Ac3H11_1210at 26.216 kb on + strand, within Ac3H11_1210at 26.217 kb on - strand, within Ac3H11_1210at 26.297 kb on + strand, within Ac3H11_1210at 26.298 kb on - strand, within Ac3H11_1210at 26.298 kb on - strand, within Ac3H11_1210at 26.488 kb on + strand, within Ac3H11_1210at 26.489 kb on - strand, within Ac3H11_1210

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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22,232 + Ac3H11_1208 0.81 -4.1
22,232 + Ac3H11_1208 0.81 -3.8
22,232 + Ac3H11_1208 0.81 -3.2
22,232 + Ac3H11_1208 0.81 -3.2
22,232 + Ac3H11_1208 0.81 -2.4
22,232 + Ac3H11_1208 0.81 -4.6
22,233 - Ac3H11_1208 0.81 -1.1
22,233 - Ac3H11_1208 0.81 -1.8
22,233 - Ac3H11_1208 0.81 -2.3
22,233 - Ac3H11_1208 0.81 -1.0
22,605 + Ac3H11_1208 0.90 -2.9
22,605 + Ac3H11_1208 0.90 +0.4
22,605 + Ac3H11_1208 0.90 -4.4
22,605 + Ac3H11_1208 0.90 -3.0
22,605 + Ac3H11_1208 0.90 -1.0
22,605 + Ac3H11_1208 0.90 -3.9
22,606 - -1.2
22,606 - -4.2
22,606 - -2.7
22,606 - -2.8
22,656 + -2.2
22,656 + -3.3
22,656 + -2.6
22,656 + -4.0
22,656 + -3.9
22,656 + -1.4
22,656 + -2.7
22,656 + -4.9
22,656 + -3.1
22,656 + -2.2
22,656 + -2.9
22,656 + -3.5
22,657 - -1.1
22,657 - -1.1
22,657 - -3.6
22,657 - -1.9
22,657 - -3.9
22,657 - -2.4
22,657 - -0.8
22,657 - -2.8
22,657 - -3.1
22,657 - -2.8
22,657 - -2.3
22,979 + -0.6
22,979 + -2.2
22,980 - -3.5
23,045 + +0.1
23,045 + -0.2
23,045 + -0.4
23,045 + -1.1
23,074 + -1.2
23,074 + +0.1
23,075 - -0.2
23,584 + Ac3H11_1209 0.17 -0.8
23,584 + Ac3H11_1209 0.17 -1.3
23,590 + Ac3H11_1209 0.17 -1.4
23,591 - Ac3H11_1209 0.17 +0.2
23,680 + Ac3H11_1209 0.21 -1.0
23,680 + Ac3H11_1209 0.21 -2.4
23,680 + Ac3H11_1209 0.21 -1.4
23,680 + Ac3H11_1209 0.21 +0.8
23,680 + Ac3H11_1209 0.21 -3.2
23,680 + Ac3H11_1209 0.21 -1.0
23,794 + Ac3H11_1209 0.25 +1.6
23,794 + Ac3H11_1209 0.25 +1.7
23,794 + Ac3H11_1209 0.25 +1.1
23,794 + Ac3H11_1209 0.25 -1.1
23,794 + Ac3H11_1209 0.25 -1.9
23,795 - Ac3H11_1209 0.25 -1.4
24,205 + Ac3H11_1209 0.40 -0.7
24,205 + Ac3H11_1209 0.40 -0.6
24,205 + Ac3H11_1209 0.40 -3.7
24,205 + Ac3H11_1209 0.40 +0.6
24,205 + Ac3H11_1209 0.40 +0.8
24,205 + Ac3H11_1209 0.40 -0.2
24,685 + Ac3H11_1209 0.57 -0.3
24,685 + Ac3H11_1209 0.57 -0.0
24,685 + Ac3H11_1209 0.57 +2.8
24,685 + Ac3H11_1209 0.57 +0.5
24,685 + Ac3H11_1209 0.57 -0.6
24,686 - Ac3H11_1209 0.57 -2.2
24,766 + Ac3H11_1209 0.60 -0.6
24,767 - Ac3H11_1209 0.60 +0.2
25,112 - Ac3H11_1209 0.72 -2.7
25,142 - Ac3H11_1209 0.73 -0.9
25,268 - Ac3H11_1209 0.78 -0.4
25,333 + Ac3H11_1209 0.80 +1.8
25,334 - Ac3H11_1209 0.80 -1.3
25,343 - Ac3H11_1209 0.81 -0.3
25,343 - Ac3H11_1209 0.81 -1.0
25,873 + +0.5
25,874 - -1.1
25,982 + -0.1
25,983 - -1.1
26,201 + Ac3H11_1210 0.28 -0.1
26,201 + Ac3H11_1210 0.28 -0.5
26,201 + Ac3H11_1210 0.28 -0.3
26,201 + Ac3H11_1210 0.28 -0.4
26,216 + Ac3H11_1210 0.30 +0.3
26,216 + Ac3H11_1210 0.30 -0.3
26,217 - Ac3H11_1210 0.30 -0.4
26,297 + Ac3H11_1210 0.41 -1.7
26,298 - Ac3H11_1210 0.42 -1.3
26,298 - Ac3H11_1210 0.42 +0.5
26,488 + Ac3H11_1210 0.67 -1.7
26,489 - Ac3H11_1210 0.68 +0.2

Or see this region's nucleotide sequence