Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS13115

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS13110 and AZOBR_RS13115 are separated by 102 nucleotidesAZOBR_RS13115 and AZOBR_RS13120 are separated by 6 nucleotidesAZOBR_RS13120 and AZOBR_RS13125 are separated by 26 nucleotides AZOBR_RS13110: AZOBR_RS13110 - LysR family transcriptional regulator, at 2,767,254 to 2,768,171 _RS13110 AZOBR_RS13115: AZOBR_RS13115 - ABC transporter permease, at 2,768,274 to 2,769,083 _RS13115 AZOBR_RS13120: AZOBR_RS13120 - sulfonate ABC transporter ATP-binding protein, at 2,769,090 to 2,769,938 _RS13120 AZOBR_RS13125: AZOBR_RS13125 - aliphatic sulfonate ABC transporter substrate-binding protein, at 2,769,965 to 2,770,999 _RS13125 Position (kb) 2768 2769 2770Strain fitness (log2 ratio) -1 0 1 2at 2768.721 kb on + strand, within AZOBR_RS13115at 2768.863 kb on - strand, within AZOBR_RS13115at 2768.994 kb on + strand, within AZOBR_RS13115at 2768.995 kb on - strand, within AZOBR_RS13115at 2769.898 kb on - strandat 2769.898 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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2,768,721 + AZOBR_RS13115 0.55 +0.3
2,768,863 - AZOBR_RS13115 0.73 +0.4
2,768,994 + AZOBR_RS13115 0.89 +2.0
2,768,995 - AZOBR_RS13115 0.89 +0.1
2,769,898 - +0.5
2,769,898 - +0.2

Or see this region's nucleotide sequence