Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS03825

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS03820 and AZOBR_RS03825 are separated by 29 nucleotidesAZOBR_RS03825 and AZOBR_RS03830 are separated by 93 nucleotides AZOBR_RS03820: AZOBR_RS03820 - microcin C ABC transporter permease YejB, at 805,221 to 806,330 _RS03820 AZOBR_RS03825: AZOBR_RS03825 - hypothetical protein, at 806,360 to 808,246 _RS03825 AZOBR_RS03830: AZOBR_RS03830 - ABC transporter substrate-binding protein, at 808,340 to 810,178 _RS03830 Position (kb) 806 807 808 809Strain fitness (log2 ratio) -1 0 1at 805.546 kb on + strand, within AZOBR_RS03820at 805.546 kb on + strand, within AZOBR_RS03820at 805.546 kb on + strand, within AZOBR_RS03820at 805.547 kb on - strand, within AZOBR_RS03820at 805.547 kb on - strand, within AZOBR_RS03820at 805.547 kb on - strand, within AZOBR_RS03820at 805.547 kb on - strand, within AZOBR_RS03820at 805.547 kb on - strand, within AZOBR_RS03820at 805.651 kb on + strand, within AZOBR_RS03820at 805.651 kb on + strand, within AZOBR_RS03820at 805.651 kb on + strand, within AZOBR_RS03820at 805.651 kb on + strand, within AZOBR_RS03820at 805.652 kb on - strand, within AZOBR_RS03820at 805.880 kb on - strand, within AZOBR_RS03820at 805.967 kb on - strand, within AZOBR_RS03820at 805.994 kb on - strand, within AZOBR_RS03820at 805.994 kb on - strand, within AZOBR_RS03820at 806.320 kb on + strandat 806.320 kb on + strandat 806.321 kb on - strandat 806.321 kb on - strandat 806.321 kb on - strandat 806.321 kb on - strandat 806.445 kb on + strandat 806.485 kb on - strandat 806.526 kb on + strandat 806.526 kb on + strandat 806.527 kb on - strandat 806.527 kb on - strandat 807.156 kb on + strand, within AZOBR_RS03825at 807.156 kb on + strand, within AZOBR_RS03825at 807.157 kb on - strand, within AZOBR_RS03825at 807.195 kb on + strand, within AZOBR_RS03825at 807.426 kb on + strand, within AZOBR_RS03825at 807.426 kb on + strand, within AZOBR_RS03825at 807.742 kb on - strand, within AZOBR_RS03825at 807.744 kb on + strand, within AZOBR_RS03825at 807.744 kb on + strand, within AZOBR_RS03825at 807.744 kb on + strand, within AZOBR_RS03825at 807.745 kb on - strand, within AZOBR_RS03825at 808.071 kb on + strandat 808.071 kb on + strandat 808.200 kb on + strandat 808.201 kb on - strandat 808.201 kb on - strandat 808.201 kb on - strandat 808.262 kb on + strandat 808.262 kb on + strandat 808.262 kb on + strandat 808.321 kb on + strandat 808.322 kb on - strandat 808.395 kb on + strandat 808.395 kb on + strandat 808.396 kb on - strandat 808.476 kb on + strandat 808.476 kb on + strandat 808.476 kb on + strandat 808.476 kb on + strandat 808.476 kb on + strandat 808.476 kb on + strandat 808.477 kb on - strandat 808.477 kb on - strandat 808.596 kb on + strand, within AZOBR_RS03830at 808.596 kb on + strand, within AZOBR_RS03830at 808.638 kb on + strandat 808.788 kb on + strand, within AZOBR_RS03830at 808.788 kb on + strand, within AZOBR_RS03830at 808.788 kb on + strand, within AZOBR_RS03830at 808.789 kb on - strand, within AZOBR_RS03830at 808.789 kb on - strand, within AZOBR_RS03830at 809.107 kb on - strand, within AZOBR_RS03830at 809.145 kb on + strand, within AZOBR_RS03830at 809.145 kb on + strand, within AZOBR_RS03830at 809.145 kb on + strand, within AZOBR_RS03830at 809.145 kb on + strand, within AZOBR_RS03830at 809.145 kb on + strand, within AZOBR_RS03830

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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805,546 + AZOBR_RS03820 0.29 -1.0
805,546 + AZOBR_RS03820 0.29 +0.1
805,546 + AZOBR_RS03820 0.29 -1.0
805,547 - AZOBR_RS03820 0.29 -0.4
805,547 - AZOBR_RS03820 0.29 -0.1
805,547 - AZOBR_RS03820 0.29 -0.9
805,547 - AZOBR_RS03820 0.29 -0.2
805,547 - AZOBR_RS03820 0.29 -0.4
805,651 + AZOBR_RS03820 0.39 -0.2
805,651 + AZOBR_RS03820 0.39 -0.4
805,651 + AZOBR_RS03820 0.39 -0.5
805,651 + AZOBR_RS03820 0.39 -0.5
805,652 - AZOBR_RS03820 0.39 -1.4
805,880 - AZOBR_RS03820 0.59 -1.5
805,967 - AZOBR_RS03820 0.67 +0.4
805,994 - AZOBR_RS03820 0.70 +0.2
805,994 - AZOBR_RS03820 0.70 -0.0
806,320 + -0.4
806,320 + -1.0
806,321 - -0.3
806,321 - -0.1
806,321 - -1.2
806,321 - -0.2
806,445 + +0.1
806,485 - -0.6
806,526 + -0.9
806,526 + -0.3
806,527 - +0.3
806,527 - -0.3
807,156 + AZOBR_RS03825 0.42 -0.0
807,156 + AZOBR_RS03825 0.42 -0.6
807,157 - AZOBR_RS03825 0.42 -0.5
807,195 + AZOBR_RS03825 0.44 -0.4
807,426 + AZOBR_RS03825 0.56 -0.7
807,426 + AZOBR_RS03825 0.56 -0.2
807,742 - AZOBR_RS03825 0.73 -0.4
807,744 + AZOBR_RS03825 0.73 -0.2
807,744 + AZOBR_RS03825 0.73 -0.8
807,744 + AZOBR_RS03825 0.73 -0.9
807,745 - AZOBR_RS03825 0.73 -0.6
808,071 + -0.4
808,071 + -1.0
808,200 + -0.4
808,201 - +1.0
808,201 - -0.4
808,201 - -0.0
808,262 + +0.4
808,262 + -0.0
808,262 + -0.0
808,321 + +0.3
808,322 - -1.0
808,395 + +0.3
808,395 + +0.3
808,396 - +0.4
808,476 + +0.8
808,476 + -0.7
808,476 + -0.1
808,476 + +0.5
808,476 + +0.1
808,476 + -0.3
808,477 - +0.1
808,477 - +0.0
808,596 + AZOBR_RS03830 0.14 -0.4
808,596 + AZOBR_RS03830 0.14 -0.8
808,638 + +1.0
808,788 + AZOBR_RS03830 0.24 -0.1
808,788 + AZOBR_RS03830 0.24 -0.0
808,788 + AZOBR_RS03830 0.24 -1.6
808,789 - AZOBR_RS03830 0.24 -0.8
808,789 - AZOBR_RS03830 0.24 +0.6
809,107 - AZOBR_RS03830 0.42 -0.1
809,145 + AZOBR_RS03830 0.44 -0.4
809,145 + AZOBR_RS03830 0.44 -0.4
809,145 + AZOBR_RS03830 0.44 +0.3
809,145 + AZOBR_RS03830 0.44 -0.5
809,145 + AZOBR_RS03830 0.44 -0.1

Or see this region's nucleotide sequence