Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3181

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3180 and DvMF_3181 are separated by 334 nucleotidesDvMF_3181 and DvMF_3182 are separated by 407 nucleotides DvMF_3180: DvMF_3180 - beta-lactamase domain protein (RefSeq), at 4,010,942 to 4,011,688 _3180 DvMF_3181: DvMF_3181 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 4,012,023 to 4,014,119 _3181 DvMF_3182: DvMF_3182 - hypothetical protein (RefSeq), at 4,014,527 to 4,015,042 _3182 Position (kb) 4012 4013 4014 4015Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4011.149 kb on + strand, within DvMF_3180at 4011.149 kb on + strand, within DvMF_3180at 4011.265 kb on - strand, within DvMF_3180at 4011.424 kb on - strand, within DvMF_3180at 4011.605 kb on - strand, within DvMF_3180at 4011.649 kb on + strandat 4011.795 kb on - strandat 4011.881 kb on - strandat 4011.904 kb on - strandat 4012.014 kb on - strandat 4012.099 kb on - strandat 4012.384 kb on - strand, within DvMF_3181at 4012.657 kb on + strand, within DvMF_3181at 4013.135 kb on - strand, within DvMF_3181at 4013.140 kb on - strand, within DvMF_3181at 4013.149 kb on + strand, within DvMF_3181at 4013.433 kb on - strand, within DvMF_3181at 4013.561 kb on - strand, within DvMF_3181at 4013.802 kb on - strand, within DvMF_3181at 4014.478 kb on - strandat 4014.587 kb on + strand, within DvMF_3182at 4014.636 kb on + strand, within DvMF_3182at 4014.688 kb on - strand, within DvMF_3182at 4014.865 kb on + strand, within DvMF_3182at 4014.865 kb on + strand, within DvMF_3182at 4014.905 kb on - strand, within DvMF_3182at 4014.975 kb on - strand, within DvMF_3182

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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4,011,149 + DvMF_3180 0.28 -0.5
4,011,149 + DvMF_3180 0.28 -0.3
4,011,265 - DvMF_3180 0.43 -2.4
4,011,424 - DvMF_3180 0.65 -1.1
4,011,605 - DvMF_3180 0.89 -0.4
4,011,649 + -0.3
4,011,795 - -2.0
4,011,881 - -1.3
4,011,904 - -3.9
4,012,014 - -1.6
4,012,099 - -4.1
4,012,384 - DvMF_3181 0.17 -2.2
4,012,657 + DvMF_3181 0.30 -0.8
4,013,135 - DvMF_3181 0.53 +1.0
4,013,140 - DvMF_3181 0.53 +0.4
4,013,149 + DvMF_3181 0.54 -2.0
4,013,433 - DvMF_3181 0.67 -2.9
4,013,561 - DvMF_3181 0.73 -1.4
4,013,802 - DvMF_3181 0.85 -0.7
4,014,478 - -0.8
4,014,587 + DvMF_3182 0.12 -0.5
4,014,636 + DvMF_3182 0.21 -2.2
4,014,688 - DvMF_3182 0.31 -1.6
4,014,865 + DvMF_3182 0.66 -2.7
4,014,865 + DvMF_3182 0.66 +0.4
4,014,905 - DvMF_3182 0.73 -1.4
4,014,975 - DvMF_3182 0.87 +0.3

Or see this region's nucleotide sequence