Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3041

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3039 and DvMF_3040 are separated by 443 nucleotidesDvMF_3040 and DvMF_3041 overlap by 4 nucleotidesDvMF_3041 and DvMF_3042 are separated by 104 nucleotides DvMF_3039: DvMF_3039 - peptidase M24 (RefSeq), at 3,836,186 to 3,837,445 _3039 DvMF_3040: DvMF_3040 - coenzyme A binding protein (RefSeq), at 3,837,889 to 3,838,311 _3040 DvMF_3041: DvMF_3041 - protein of unknown function UPF0153 (RefSeq), at 3,838,308 to 3,838,835 _3041 DvMF_3042: DvMF_3042 - heat shock protein DnaJ domain protein (RefSeq), at 3,838,940 to 3,839,908 _3042 Position (kb) 3838 3839Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 3837.429 kb on + strandat 3837.491 kb on + strandat 3837.499 kb on - strandat 3837.499 kb on - strandat 3837.546 kb on - strandat 3837.670 kb on - strandat 3837.943 kb on - strandat 3838.586 kb on + strand, within DvMF_3041at 3838.594 kb on - strand, within DvMF_3041at 3839.067 kb on - strand, within DvMF_3042at 3839.307 kb on - strand, within DvMF_3042at 3839.601 kb on + strand, within DvMF_3042at 3839.609 kb on - strand, within DvMF_3042at 3839.691 kb on - strand, within DvMF_3042at 3839.765 kb on - strand, within DvMF_3042

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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3,837,429 + -1.2
3,837,491 + -1.5
3,837,499 - -1.7
3,837,499 - -1.7
3,837,546 - +1.0
3,837,670 - -1.3
3,837,943 - +5.0
3,838,586 + DvMF_3041 0.53 -1.9
3,838,594 - DvMF_3041 0.54 -4.5
3,839,067 - DvMF_3042 0.13 -1.3
3,839,307 - DvMF_3042 0.38 +0.6
3,839,601 + DvMF_3042 0.68 -1.1
3,839,609 - DvMF_3042 0.69 -1.7
3,839,691 - DvMF_3042 0.78 -2.4
3,839,765 - DvMF_3042 0.85 -1.2

Or see this region's nucleotide sequence