Experiment: MoYLS4 with Lomefloxacin 0.00156 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2979 and DvMF_2980 are separated by 285 nucleotides DvMF_2980 and DvMF_2981 are separated by 110 nucleotides DvMF_2981 and DvMF_2982 are separated by 181 nucleotides DvMF_2982 and DvMF_2983 are separated by 97 nucleotides
DvMF_2979: DvMF_2979 - NADPH-dependent FMN reductase (RefSeq), at 3,753,510 to 3,754,124
_2979
DvMF_2980: DvMF_2980 - Rhodanese domain protein (RefSeq), at 3,754,410 to 3,754,916
_2980
DvMF_2981: DvMF_2981 - VanZ family protein (RefSeq), at 3,755,027 to 3,755,596
_2981
DvMF_2982: DvMF_2982 - SlyX family protein (RefSeq), at 3,755,778 to 3,755,999
_2982
DvMF_2983: DvMF_2983 - protein of unknown function DUF55 (RefSeq), at 3,756,097 to 3,756,564
_2983
Position (kb)
3755
3756 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3754.127 kb on - strand at 3754.151 kb on - strand at 3754.289 kb on + strand at 3754.364 kb on - strand at 3754.381 kb on - strand at 3754.381 kb on - strand at 3754.381 kb on - strand at 3754.579 kb on - strand, within DvMF_2980 at 3754.742 kb on - strand, within DvMF_2980 at 3754.867 kb on + strand at 3755.058 kb on + strand at 3755.066 kb on - strand at 3755.328 kb on - strand, within DvMF_2981 at 3755.354 kb on + strand, within DvMF_2981 at 3755.551 kb on - strand at 3755.598 kb on - strand at 3755.979 kb on + strand at 3756.027 kb on - strand at 3756.238 kb on - strand, within DvMF_2983 at 3756.355 kb on - strand, within DvMF_2983 at 3756.422 kb on - strand, within DvMF_2983 at 3756.422 kb on - strand, within DvMF_2983 at 3756.539 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM remove 3,754,127 - -0.5 3,754,151 - -3.1 3,754,289 + -1.9 3,754,364 - -3.7 3,754,381 - -1.1 3,754,381 - -2.8 3,754,381 - -2.3 3,754,579 - DvMF_2980 0.33 -1.1 3,754,742 - DvMF_2980 0.65 -2.0 3,754,867 + -3.9 3,755,058 + -0.6 3,755,066 - -3.1 3,755,328 - DvMF_2981 0.53 -0.6 3,755,354 + DvMF_2981 0.57 -0.3 3,755,551 - -0.9 3,755,598 - -3.7 3,755,979 + -2.4 3,756,027 - -3.1 3,756,238 - DvMF_2983 0.30 -1.0 3,756,355 - DvMF_2983 0.55 -1.4 3,756,422 - DvMF_2983 0.69 -1.5 3,756,422 - DvMF_2983 0.69 -1.0 3,756,539 + -1.5
Or see this region's nucleotide sequence