Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2749

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2748 and DvMF_2749 are separated by 645 nucleotidesDvMF_2749 and DvMF_2750 are separated by 475 nucleotides DvMF_2748: DvMF_2748 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,471,817 to 3,473,445 _2748 DvMF_2749: DvMF_2749 - hypothetical protein (RefSeq), at 3,474,091 to 3,474,687 _2749 DvMF_2750: DvMF_2750 - Extracellular ligand-binding receptor (RefSeq), at 3,475,163 to 3,476,290 _2750 Position (kb) 3474 3475Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3473.148 kb on + strand, within DvMF_2748at 3473.325 kb on - strandat 3473.846 kb on - strandat 3473.846 kb on - strandat 3473.864 kb on - strandat 3473.864 kb on - strandat 3473.877 kb on - strandat 3473.973 kb on + strandat 3473.997 kb on + strandat 3474.007 kb on + strandat 3474.025 kb on - strandat 3474.412 kb on - strand, within DvMF_2749at 3474.541 kb on - strand, within DvMF_2749at 3474.631 kb on - strandat 3474.633 kb on + strandat 3474.633 kb on + strandat 3474.649 kb on - strandat 3474.867 kb on - strandat 3475.079 kb on + strandat 3475.128 kb on + strandat 3475.163 kb on - strandat 3475.404 kb on + strand, within DvMF_2750

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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3,473,148 + DvMF_2748 0.82 -0.7
3,473,325 - -1.4
3,473,846 - -1.1
3,473,846 - -1.1
3,473,864 - -0.8
3,473,864 - -0.8
3,473,877 - -3.0
3,473,973 + -1.6
3,473,997 + -1.3
3,474,007 + -0.8
3,474,025 - -1.2
3,474,412 - DvMF_2749 0.54 -2.0
3,474,541 - DvMF_2749 0.75 -3.2
3,474,631 - -0.3
3,474,633 + -0.1
3,474,633 + -2.1
3,474,649 - -2.1
3,474,867 - -4.1
3,475,079 + -1.2
3,475,128 + -2.9
3,475,163 - -0.4
3,475,404 + DvMF_2750 0.21 -2.6

Or see this region's nucleotide sequence