Experiment: MoYLS4 with Lomefloxacin 0.00156 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_R0071 and DvMF_2637 are separated by 545 nucleotides DvMF_2637 and DvMF_2638 are separated by 36 nucleotides
DvMF_R0071: DvMF_R0071 - tRNA-Glu (RefSeq), at 3,333,078 to 3,333,154
_R0071
DvMF_2637: DvMF_2637 - diguanylate cyclase with extracellular sensor (RefSeq), at 3,333,700 to 3,335,124
_2637
DvMF_2638: DvMF_2638 - UDP-N-acetylglucosamine 2-epimerase (RefSeq), at 3,335,161 to 3,336,594
_2638
Position (kb)
3333
3334
3335
3336 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3332.706 kb on - strand at 3332.924 kb on + strand at 3333.235 kb on + strand at 3333.255 kb on - strand at 3333.304 kb on + strand at 3333.354 kb on + strand at 3333.362 kb on - strand at 3333.504 kb on - strand at 3333.831 kb on - strand at 3333.898 kb on + strand, within DvMF_2637 at 3334.211 kb on + strand, within DvMF_2637 at 3334.230 kb on + strand, within DvMF_2637 at 3334.238 kb on - strand, within DvMF_2637 at 3334.450 kb on + strand, within DvMF_2637 at 3334.458 kb on - strand, within DvMF_2637 at 3334.633 kb on + strand, within DvMF_2637 at 3334.641 kb on - strand, within DvMF_2637 at 3334.980 kb on + strand, within DvMF_2637 at 3334.980 kb on + strand, within DvMF_2637 at 3334.997 kb on + strand at 3335.061 kb on - strand at 3335.074 kb on + strand at 3335.082 kb on - strand at 3335.082 kb on - strand at 3335.082 kb on - strand at 3335.082 kb on - strand at 3335.305 kb on + strand, within DvMF_2638 at 3335.464 kb on + strand, within DvMF_2638 at 3335.464 kb on + strand, within DvMF_2638 at 3335.725 kb on + strand, within DvMF_2638 at 3335.751 kb on + strand, within DvMF_2638 at 3335.818 kb on - strand, within DvMF_2638 at 3335.956 kb on + strand, within DvMF_2638
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM remove 3,332,706 - -2.2 3,332,924 + -3.3 3,333,235 + -2.5 3,333,255 - -1.2 3,333,304 + -3.6 3,333,354 + -0.9 3,333,362 - -0.1 3,333,504 - -1.2 3,333,831 - -1.3 3,333,898 + DvMF_2637 0.14 -0.6 3,334,211 + DvMF_2637 0.36 -1.8 3,334,230 + DvMF_2637 0.37 -1.2 3,334,238 - DvMF_2637 0.38 -2.9 3,334,450 + DvMF_2637 0.53 -0.0 3,334,458 - DvMF_2637 0.53 -3.6 3,334,633 + DvMF_2637 0.65 -0.4 3,334,641 - DvMF_2637 0.66 -3.3 3,334,980 + DvMF_2637 0.90 -2.3 3,334,980 + DvMF_2637 0.90 -1.4 3,334,997 + -3.5 3,335,061 - -1.9 3,335,074 + -3.0 3,335,082 - -0.6 3,335,082 - -0.9 3,335,082 - -1.3 3,335,082 - -1.2 3,335,305 + DvMF_2638 0.10 -5.4 3,335,464 + DvMF_2638 0.21 -3.0 3,335,464 + DvMF_2638 0.21 -1.8 3,335,725 + DvMF_2638 0.39 -0.3 3,335,751 + DvMF_2638 0.41 -1.3 3,335,818 - DvMF_2638 0.46 -0.8 3,335,956 + DvMF_2638 0.55 -1.3
Or see this region's nucleotide sequence