Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2633

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2632 and DvMF_2633 are separated by 535 nucleotidesDvMF_2633 and DvMF_2634 are separated by 680 nucleotides DvMF_2632: DvMF_2632 - dolichyl-phosphate-mannose-protein mannosyltransferase family protein (RefSeq), at 3,324,982 to 3,326,772 _2632 DvMF_2633: DvMF_2633 - Aldehyde Dehydrogenase (RefSeq), at 3,327,308 to 3,328,690 _2633 DvMF_2634: DvMF_2634 - FAD dependent oxidoreductase (RefSeq), at 3,329,371 to 3,330,762 _2634 Position (kb) 3327 3328 3329Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3326.871 kb on - strandat 3326.883 kb on + strandat 3326.908 kb on + strandat 3327.038 kb on - strandat 3327.526 kb on - strand, within DvMF_2633at 3327.644 kb on + strand, within DvMF_2633at 3327.678 kb on - strand, within DvMF_2633at 3327.679 kb on - strand, within DvMF_2633at 3327.699 kb on - strand, within DvMF_2633at 3327.794 kb on - strand, within DvMF_2633at 3327.856 kb on + strand, within DvMF_2633at 3327.934 kb on - strand, within DvMF_2633at 3328.322 kb on + strand, within DvMF_2633at 3328.468 kb on - strand, within DvMF_2633at 3328.470 kb on + strand, within DvMF_2633at 3328.632 kb on + strandat 3328.634 kb on + strandat 3328.686 kb on + strandat 3328.784 kb on + strandat 3328.905 kb on + strandat 3328.927 kb on - strandat 3329.022 kb on + strandat 3329.037 kb on + strandat 3329.089 kb on + strandat 3329.095 kb on + strandat 3329.287 kb on - strandat 3329.389 kb on - strandat 3329.638 kb on - strand, within DvMF_2634at 3329.654 kb on - strand, within DvMF_2634

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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3,326,871 - -0.8
3,326,883 + -0.8
3,326,908 + -1.4
3,327,038 - -2.3
3,327,526 - DvMF_2633 0.16 -0.6
3,327,644 + DvMF_2633 0.24 -2.3
3,327,678 - DvMF_2633 0.27 -2.5
3,327,679 - DvMF_2633 0.27 -0.8
3,327,699 - DvMF_2633 0.28 -0.8
3,327,794 - DvMF_2633 0.35 -0.6
3,327,856 + DvMF_2633 0.40 -0.5
3,327,934 - DvMF_2633 0.45 +0.3
3,328,322 + DvMF_2633 0.73 -1.1
3,328,468 - DvMF_2633 0.84 -1.2
3,328,470 + DvMF_2633 0.84 -3.9
3,328,632 + -1.2
3,328,634 + -1.4
3,328,686 + -0.8
3,328,784 + -4.8
3,328,905 + -2.4
3,328,927 - -2.0
3,329,022 + -2.3
3,329,037 + -2.5
3,329,089 + -1.4
3,329,095 + -3.9
3,329,287 - -5.0
3,329,389 - -1.1
3,329,638 - DvMF_2634 0.19 -4.0
3,329,654 - DvMF_2634 0.20 -1.1

Or see this region's nucleotide sequence