Experiment: MoYLS4 with Lomefloxacin 0.00156 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2548 and DvMF_2549 overlap by 4 nucleotides DvMF_2549 and DvMF_2550 overlap by 4 nucleotides
DvMF_2548: DvMF_2548 - multi-sensor signal transduction histidine kinase (RefSeq), at 3,219,640 to 3,222,225
_2548
DvMF_2549: DvMF_2549 - response regulator receiver sensor signal transduction histidine kinase (RefSeq), at 3,222,222 to 3,223,562
_2549
DvMF_2550: DvMF_2550 - multi-sensor signal transduction histidine kinase (RefSeq), at 3,223,559 to 3,225,616
_2550
Position (kb)
3222
3223
3224 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3221.334 kb on + strand, within DvMF_2548 at 3221.433 kb on + strand, within DvMF_2548 at 3221.582 kb on + strand, within DvMF_2548 at 3221.689 kb on - strand, within DvMF_2548 at 3221.742 kb on - strand, within DvMF_2548 at 3221.774 kb on + strand, within DvMF_2548 at 3221.774 kb on + strand, within DvMF_2548 at 3221.782 kb on - strand, within DvMF_2548 at 3221.953 kb on + strand, within DvMF_2548 at 3222.046 kb on - strand at 3222.098 kb on - strand at 3222.171 kb on + strand at 3222.437 kb on - strand, within DvMF_2549 at 3222.677 kb on + strand, within DvMF_2549 at 3222.772 kb on - strand, within DvMF_2549 at 3223.020 kb on - strand, within DvMF_2549 at 3223.020 kb on - strand, within DvMF_2549 at 3223.052 kb on - strand, within DvMF_2549 at 3223.226 kb on - strand, within DvMF_2549 at 3223.226 kb on - strand, within DvMF_2549 at 3223.378 kb on - strand, within DvMF_2549 at 3223.398 kb on + strand, within DvMF_2549 at 3223.462 kb on - strand at 3223.874 kb on - strand, within DvMF_2550 at 3223.874 kb on - strand, within DvMF_2550 at 3224.011 kb on - strand, within DvMF_2550 at 3224.011 kb on - strand, within DvMF_2550 at 3224.029 kb on - strand, within DvMF_2550 at 3224.123 kb on - strand, within DvMF_2550 at 3224.310 kb on + strand, within DvMF_2550 at 3224.313 kb on + strand, within DvMF_2550 at 3224.346 kb on - strand, within DvMF_2550 at 3224.470 kb on - strand, within DvMF_2550 at 3224.475 kb on + strand, within DvMF_2550
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM remove 3,221,334 + DvMF_2548 0.66 -1.7 3,221,433 + DvMF_2548 0.69 -2.4 3,221,582 + DvMF_2548 0.75 -4.8 3,221,689 - DvMF_2548 0.79 -3.0 3,221,742 - DvMF_2548 0.81 -2.7 3,221,774 + DvMF_2548 0.83 -5.7 3,221,774 + DvMF_2548 0.83 +0.6 3,221,782 - DvMF_2548 0.83 -0.6 3,221,953 + DvMF_2548 0.89 +0.0 3,222,046 - -2.9 3,222,098 - -0.6 3,222,171 + -1.5 3,222,437 - DvMF_2549 0.16 -4.5 3,222,677 + DvMF_2549 0.34 +0.9 3,222,772 - DvMF_2549 0.41 -1.0 3,223,020 - DvMF_2549 0.60 -1.6 3,223,020 - DvMF_2549 0.60 -0.9 3,223,052 - DvMF_2549 0.62 -2.0 3,223,226 - DvMF_2549 0.75 -1.2 3,223,226 - DvMF_2549 0.75 -1.5 3,223,378 - DvMF_2549 0.86 -1.0 3,223,398 + DvMF_2549 0.88 -0.3 3,223,462 - -1.5 3,223,874 - DvMF_2550 0.15 -1.8 3,223,874 - DvMF_2550 0.15 -2.5 3,224,011 - DvMF_2550 0.22 -1.7 3,224,011 - DvMF_2550 0.22 -3.8 3,224,029 - DvMF_2550 0.23 -1.1 3,224,123 - DvMF_2550 0.27 -0.9 3,224,310 + DvMF_2550 0.36 -2.9 3,224,313 + DvMF_2550 0.37 -0.1 3,224,346 - DvMF_2550 0.38 -2.1 3,224,470 - DvMF_2550 0.44 -2.9 3,224,475 + DvMF_2550 0.45 -1.7
Or see this region's nucleotide sequence