Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2549

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2548 and DvMF_2549 overlap by 4 nucleotidesDvMF_2549 and DvMF_2550 overlap by 4 nucleotides DvMF_2548: DvMF_2548 - multi-sensor signal transduction histidine kinase (RefSeq), at 3,219,640 to 3,222,225 _2548 DvMF_2549: DvMF_2549 - response regulator receiver sensor signal transduction histidine kinase (RefSeq), at 3,222,222 to 3,223,562 _2549 DvMF_2550: DvMF_2550 - multi-sensor signal transduction histidine kinase (RefSeq), at 3,223,559 to 3,225,616 _2550 Position (kb) 3222 3223 3224Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3221.334 kb on + strand, within DvMF_2548at 3221.433 kb on + strand, within DvMF_2548at 3221.582 kb on + strand, within DvMF_2548at 3221.689 kb on - strand, within DvMF_2548at 3221.742 kb on - strand, within DvMF_2548at 3221.774 kb on + strand, within DvMF_2548at 3221.774 kb on + strand, within DvMF_2548at 3221.782 kb on - strand, within DvMF_2548at 3221.953 kb on + strand, within DvMF_2548at 3222.046 kb on - strandat 3222.098 kb on - strandat 3222.171 kb on + strandat 3222.437 kb on - strand, within DvMF_2549at 3222.677 kb on + strand, within DvMF_2549at 3222.772 kb on - strand, within DvMF_2549at 3223.020 kb on - strand, within DvMF_2549at 3223.020 kb on - strand, within DvMF_2549at 3223.052 kb on - strand, within DvMF_2549at 3223.226 kb on - strand, within DvMF_2549at 3223.226 kb on - strand, within DvMF_2549at 3223.378 kb on - strand, within DvMF_2549at 3223.398 kb on + strand, within DvMF_2549at 3223.462 kb on - strandat 3223.874 kb on - strand, within DvMF_2550at 3223.874 kb on - strand, within DvMF_2550at 3224.011 kb on - strand, within DvMF_2550at 3224.011 kb on - strand, within DvMF_2550at 3224.029 kb on - strand, within DvMF_2550at 3224.123 kb on - strand, within DvMF_2550at 3224.310 kb on + strand, within DvMF_2550at 3224.313 kb on + strand, within DvMF_2550at 3224.346 kb on - strand, within DvMF_2550at 3224.470 kb on - strand, within DvMF_2550at 3224.475 kb on + strand, within DvMF_2550

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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3,221,334 + DvMF_2548 0.66 -1.7
3,221,433 + DvMF_2548 0.69 -2.4
3,221,582 + DvMF_2548 0.75 -4.8
3,221,689 - DvMF_2548 0.79 -3.0
3,221,742 - DvMF_2548 0.81 -2.7
3,221,774 + DvMF_2548 0.83 -5.7
3,221,774 + DvMF_2548 0.83 +0.6
3,221,782 - DvMF_2548 0.83 -0.6
3,221,953 + DvMF_2548 0.89 +0.0
3,222,046 - -2.9
3,222,098 - -0.6
3,222,171 + -1.5
3,222,437 - DvMF_2549 0.16 -4.5
3,222,677 + DvMF_2549 0.34 +0.9
3,222,772 - DvMF_2549 0.41 -1.0
3,223,020 - DvMF_2549 0.60 -1.6
3,223,020 - DvMF_2549 0.60 -0.9
3,223,052 - DvMF_2549 0.62 -2.0
3,223,226 - DvMF_2549 0.75 -1.2
3,223,226 - DvMF_2549 0.75 -1.5
3,223,378 - DvMF_2549 0.86 -1.0
3,223,398 + DvMF_2549 0.88 -0.3
3,223,462 - -1.5
3,223,874 - DvMF_2550 0.15 -1.8
3,223,874 - DvMF_2550 0.15 -2.5
3,224,011 - DvMF_2550 0.22 -1.7
3,224,011 - DvMF_2550 0.22 -3.8
3,224,029 - DvMF_2550 0.23 -1.1
3,224,123 - DvMF_2550 0.27 -0.9
3,224,310 + DvMF_2550 0.36 -2.9
3,224,313 + DvMF_2550 0.37 -0.1
3,224,346 - DvMF_2550 0.38 -2.1
3,224,470 - DvMF_2550 0.44 -2.9
3,224,475 + DvMF_2550 0.45 -1.7

Or see this region's nucleotide sequence