Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2429

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2427 and DvMF_2428 overlap by 8 nucleotidesDvMF_2428 and DvMF_2429 are separated by 16 nucleotidesDvMF_2429 and DvMF_2430 are separated by 233 nucleotidesDvMF_2430 and DvMF_2431 are separated by 86 nucleotides DvMF_2427: DvMF_2427 - type III secretion apparatus protein, YscD/HrpQ family (RefSeq), at 3,064,461 to 3,066,029 _2427 DvMF_2428: DvMF_2428 - hypothetical protein (RefSeq), at 3,066,022 to 3,066,240 _2428 DvMF_2429: DvMF_2429 - hypothetical protein (RefSeq), at 3,066,257 to 3,066,511 _2429 DvMF_2430: DvMF_2430 - hypothetical protein (RefSeq), at 3,066,745 to 3,067,110 _2430 DvMF_2431: DvMF_2431 - hypothetical protein (RefSeq), at 3,067,197 to 3,067,970 _2431 Position (kb) 3066 3067Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3065.264 kb on + strand, within DvMF_2427at 3065.776 kb on - strand, within DvMF_2427at 3066.108 kb on - strand, within DvMF_2428at 3066.319 kb on - strand, within DvMF_2429at 3066.422 kb on + strand, within DvMF_2429at 3066.427 kb on + strand, within DvMF_2429at 3066.435 kb on - strand, within DvMF_2429at 3066.435 kb on - strand, within DvMF_2429at 3066.458 kb on + strand, within DvMF_2429at 3066.514 kb on - strandat 3066.580 kb on + strandat 3066.586 kb on + strandat 3066.793 kb on + strand, within DvMF_2430at 3066.836 kb on - strand, within DvMF_2430at 3066.956 kb on - strand, within DvMF_2430at 3067.004 kb on - strand, within DvMF_2430at 3067.113 kb on - strandat 3067.235 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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3,065,264 + DvMF_2427 0.51 +0.5
3,065,776 - DvMF_2427 0.84 -0.8
3,066,108 - DvMF_2428 0.39 -2.8
3,066,319 - DvMF_2429 0.24 -0.0
3,066,422 + DvMF_2429 0.65 -1.7
3,066,427 + DvMF_2429 0.67 -1.5
3,066,435 - DvMF_2429 0.70 -0.9
3,066,435 - DvMF_2429 0.70 -1.0
3,066,458 + DvMF_2429 0.79 -1.6
3,066,514 - -0.9
3,066,580 + -0.9
3,066,586 + -0.9
3,066,793 + DvMF_2430 0.13 -0.6
3,066,836 - DvMF_2430 0.25 -1.3
3,066,956 - DvMF_2430 0.58 -0.4
3,067,004 - DvMF_2430 0.71 -1.3
3,067,113 - -2.2
3,067,235 + -4.4

Or see this region's nucleotide sequence