Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2264

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntengA and DvMF_2264 are separated by 550 nucleotidesDvMF_2264 and DvMF_2265 are separated by 142 nucleotides DvMF_2263: engA - GTP-binding protein EngA (RefSeq), at 2,842,497 to 2,844,017 engA DvMF_2264: DvMF_2264 - DNA binding domain protein, excisionase family (RefSeq), at 2,844,568 to 2,845,554 _2264 DvMF_2265: DvMF_2265 - transcriptional regulator, MarR family (RefSeq), at 2,845,697 to 2,846,587 _2265 Position (kb) 2844 2845 2846Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2844.086 kb on - strandat 2844.091 kb on - strandat 2844.118 kb on - strandat 2844.122 kb on + strandat 2844.692 kb on - strand, within DvMF_2264at 2844.828 kb on - strand, within DvMF_2264at 2844.840 kb on + strand, within DvMF_2264at 2844.918 kb on - strand, within DvMF_2264at 2844.943 kb on - strand, within DvMF_2264at 2844.944 kb on - strand, within DvMF_2264at 2845.101 kb on + strand, within DvMF_2264at 2845.125 kb on + strand, within DvMF_2264at 2845.125 kb on + strand, within DvMF_2264at 2845.125 kb on + strand, within DvMF_2264at 2845.133 kb on - strand, within DvMF_2264at 2845.276 kb on - strand, within DvMF_2264at 2845.376 kb on + strand, within DvMF_2264at 2845.501 kb on + strandat 2845.604 kb on - strandat 2845.678 kb on + strandat 2845.720 kb on + strandat 2845.952 kb on + strand, within DvMF_2265at 2845.952 kb on + strand, within DvMF_2265at 2845.971 kb on - strand, within DvMF_2265

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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2,844,086 - -0.9
2,844,091 - -1.7
2,844,118 - -0.4
2,844,122 + -2.2
2,844,692 - DvMF_2264 0.13 +0.8
2,844,828 - DvMF_2264 0.26 -1.7
2,844,840 + DvMF_2264 0.28 -4.3
2,844,918 - DvMF_2264 0.35 -0.7
2,844,943 - DvMF_2264 0.38 -0.9
2,844,944 - DvMF_2264 0.38 -0.5
2,845,101 + DvMF_2264 0.54 -0.4
2,845,125 + DvMF_2264 0.56 -0.5
2,845,125 + DvMF_2264 0.56 -1.0
2,845,125 + DvMF_2264 0.56 -0.8
2,845,133 - DvMF_2264 0.57 -4.3
2,845,276 - DvMF_2264 0.72 -2.9
2,845,376 + DvMF_2264 0.82 -1.6
2,845,501 + -0.5
2,845,604 - -2.2
2,845,678 + -0.8
2,845,720 + -4.5
2,845,952 + DvMF_2265 0.29 +0.8
2,845,952 + DvMF_2265 0.29 -2.0
2,845,971 - DvMF_2265 0.31 -0.6

Or see this region's nucleotide sequence