Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2248

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2246 and DvMF_2247 overlap by 14 nucleotidesDvMF_2247 and DvMF_2248 are separated by 311 nucleotidesDvMF_2248 and DvMF_2249 are separated by 402 nucleotides DvMF_2246: DvMF_2246 - transcriptional regulator, LysR family (RefSeq), at 2,820,336 to 2,821,301 _2246 DvMF_2247: DvMF_2247 - channel protein, hemolysin III family (RefSeq), at 2,821,288 to 2,821,935 _2247 DvMF_2248: DvMF_2248 - signal recognition particle-docking protein FtsY (RefSeq), at 2,822,247 to 2,823,641 _2248 DvMF_2249: DvMF_2249 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 2,824,044 to 2,826,359 _2249 Position (kb) 2822 2823 2824Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2821.256 kb on + strandat 2821.317 kb on - strandat 2821.655 kb on - strand, within DvMF_2247at 2821.904 kb on - strandat 2822.203 kb on + strandat 2824.047 kb on + strandat 2824.288 kb on + strand, within DvMF_2249at 2824.361 kb on - strand, within DvMF_2249at 2824.365 kb on + strand, within DvMF_2249at 2824.366 kb on - strand, within DvMF_2249at 2824.462 kb on - strand, within DvMF_2249

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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2,821,256 + -2.8
2,821,317 - -0.4
2,821,655 - DvMF_2247 0.57 -2.0
2,821,904 - -4.1
2,822,203 + +0.0
2,824,047 + -1.6
2,824,288 + DvMF_2249 0.11 +0.1
2,824,361 - DvMF_2249 0.14 -0.4
2,824,365 + DvMF_2249 0.14 -4.2
2,824,366 - DvMF_2249 0.14 -1.8
2,824,462 - DvMF_2249 0.18 -1.7

Or see this region's nucleotide sequence