Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2193

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2192 and DvMF_2193 are separated by 97 nucleotidesDvMF_2193 and DvMF_2194 are separated by 876 nucleotides DvMF_2192: DvMF_2192 - protein of unknown function DUF81 (RefSeq), at 2,737,714 to 2,738,856 _2192 DvMF_2193: DvMF_2193 - protein of unknown function DUF169 (RefSeq), at 2,738,954 to 2,739,730 _2193 DvMF_2194: DvMF_2194 - permease (RefSeq), at 2,740,607 to 2,741,704 _2194 Position (kb) 2738 2739 2740Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2738.096 kb on - strand, within DvMF_2192at 2738.142 kb on + strand, within DvMF_2192at 2738.289 kb on + strand, within DvMF_2192at 2738.316 kb on + strand, within DvMF_2192at 2738.524 kb on + strand, within DvMF_2192at 2738.656 kb on + strand, within DvMF_2192at 2738.675 kb on - strand, within DvMF_2192at 2738.680 kb on - strand, within DvMF_2192at 2738.856 kb on + strandat 2739.135 kb on - strand, within DvMF_2193at 2739.254 kb on - strand, within DvMF_2193at 2739.369 kb on + strand, within DvMF_2193at 2739.377 kb on - strand, within DvMF_2193at 2739.421 kb on + strand, within DvMF_2193at 2739.509 kb on + strand, within DvMF_2193at 2739.517 kb on - strand, within DvMF_2193at 2739.517 kb on - strand, within DvMF_2193at 2739.537 kb on + strand, within DvMF_2193at 2739.579 kb on - strand, within DvMF_2193at 2739.587 kb on - strand, within DvMF_2193at 2739.606 kb on - strand, within DvMF_2193at 2739.738 kb on + strandat 2739.898 kb on + strandat 2739.898 kb on + strandat 2739.906 kb on - strandat 2739.906 kb on - strandat 2740.391 kb on - strandat 2740.426 kb on - strandat 2740.477 kb on - strandat 2740.610 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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2,738,096 - DvMF_2192 0.33 -2.2
2,738,142 + DvMF_2192 0.37 -1.2
2,738,289 + DvMF_2192 0.50 -1.3
2,738,316 + DvMF_2192 0.53 -1.9
2,738,524 + DvMF_2192 0.71 -1.6
2,738,656 + DvMF_2192 0.82 -0.6
2,738,675 - DvMF_2192 0.84 -2.0
2,738,680 - DvMF_2192 0.85 -1.6
2,738,856 + +0.4
2,739,135 - DvMF_2193 0.23 -1.2
2,739,254 - DvMF_2193 0.39 -1.4
2,739,369 + DvMF_2193 0.53 -2.4
2,739,377 - DvMF_2193 0.54 -1.4
2,739,421 + DvMF_2193 0.60 -1.8
2,739,509 + DvMF_2193 0.71 -1.8
2,739,517 - DvMF_2193 0.72 -1.0
2,739,517 - DvMF_2193 0.72 -0.7
2,739,537 + DvMF_2193 0.75 -0.9
2,739,579 - DvMF_2193 0.80 -1.6
2,739,587 - DvMF_2193 0.81 -1.4
2,739,606 - DvMF_2193 0.84 -0.5
2,739,738 + -0.9
2,739,898 + -4.8
2,739,898 + -1.4
2,739,906 - -0.7
2,739,906 - +0.2
2,740,391 - -1.4
2,740,426 - -0.7
2,740,477 - -4.7
2,740,610 + -0.8

Or see this region's nucleotide sequence