Experiment: MoYLS4 with Lomefloxacin 0.00156 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2074 and DvMF_2075 are separated by 652 nucleotides DvMF_2075 and DvMF_2076 are separated by 571 nucleotides
DvMF_2074: DvMF_2074 - glycosyl transferase family 2 (RefSeq), at 2,574,675 to 2,575,799
_2074
DvMF_2075: DvMF_2075 - fumarate hydratase, class II (RefSeq), at 2,576,452 to 2,578,038
_2075
DvMF_2076: DvMF_2076 - GPR1/FUN34/yaaH family protein (RefSeq), at 2,578,610 to 2,579,161
_2076
Position (kb)
2576
2577
2578
2579 Strain fitness (log2 ratio)
-1
0
1 at 2575.532 kb on + strand, within DvMF_2074 at 2575.640 kb on + strand, within DvMF_2074 at 2575.662 kb on + strand, within DvMF_2074 at 2575.704 kb on - strand at 2575.746 kb on - strand at 2575.964 kb on - strand at 2575.966 kb on + strand at 2576.015 kb on + strand at 2576.089 kb on - strand at 2576.123 kb on + strand at 2576.268 kb on - strand at 2576.371 kb on - strand at 2576.470 kb on - strand at 2576.472 kb on + strand at 2576.506 kb on - strand at 2576.605 kb on - strand at 2576.613 kb on + strand, within DvMF_2075 at 2576.680 kb on + strand, within DvMF_2075 at 2576.684 kb on + strand, within DvMF_2075 at 2576.755 kb on + strand, within DvMF_2075 at 2576.834 kb on + strand, within DvMF_2075 at 2576.958 kb on - strand, within DvMF_2075 at 2577.052 kb on + strand, within DvMF_2075 at 2577.070 kb on + strand, within DvMF_2075 at 2577.346 kb on + strand, within DvMF_2075 at 2577.361 kb on - strand, within DvMF_2075 at 2577.457 kb on - strand, within DvMF_2075 at 2577.462 kb on - strand, within DvMF_2075 at 2577.589 kb on + strand, within DvMF_2075 at 2577.603 kb on + strand, within DvMF_2075 at 2577.608 kb on + strand, within DvMF_2075 at 2577.611 kb on - strand, within DvMF_2075 at 2577.611 kb on - strand, within DvMF_2075 at 2577.648 kb on + strand, within DvMF_2075 at 2577.655 kb on + strand, within DvMF_2075 at 2577.656 kb on - strand, within DvMF_2075 at 2577.882 kb on + strand at 2577.926 kb on + strand at 2577.932 kb on - strand at 2577.932 kb on - strand at 2577.934 kb on - strand at 2577.936 kb on + strand at 2578.024 kb on + strand at 2578.079 kb on - strand at 2578.278 kb on + strand at 2578.485 kb on - strand at 2578.502 kb on - strand at 2578.582 kb on + strand at 2578.794 kb on - strand, within DvMF_2076 at 2578.920 kb on + strand, within DvMF_2076 at 2578.936 kb on - strand, within DvMF_2076 at 2578.971 kb on - strand, within DvMF_2076
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM remove 2,575,532 + DvMF_2074 0.76 -0.2 2,575,640 + DvMF_2074 0.86 -0.5 2,575,662 + DvMF_2074 0.88 -0.4 2,575,704 - -0.2 2,575,746 - -0.4 2,575,964 - -0.3 2,575,966 + -0.1 2,576,015 + -0.9 2,576,089 - +0.3 2,576,123 + +0.2 2,576,268 - -1.1 2,576,371 - -0.8 2,576,470 - +0.5 2,576,472 + +0.3 2,576,506 - +0.5 2,576,605 - -0.2 2,576,613 + DvMF_2075 0.10 -0.2 2,576,680 + DvMF_2075 0.14 -0.7 2,576,684 + DvMF_2075 0.15 -0.5 2,576,755 + DvMF_2075 0.19 +0.2 2,576,834 + DvMF_2075 0.24 -0.2 2,576,958 - DvMF_2075 0.32 +0.6 2,577,052 + DvMF_2075 0.38 -0.1 2,577,070 + DvMF_2075 0.39 +1.1 2,577,346 + DvMF_2075 0.56 -0.0 2,577,361 - DvMF_2075 0.57 -0.3 2,577,457 - DvMF_2075 0.63 -0.3 2,577,462 - DvMF_2075 0.64 +0.2 2,577,589 + DvMF_2075 0.72 +0.0 2,577,603 + DvMF_2075 0.73 +0.0 2,577,608 + DvMF_2075 0.73 +0.0 2,577,611 - DvMF_2075 0.73 +0.3 2,577,611 - DvMF_2075 0.73 +0.7 2,577,648 + DvMF_2075 0.75 +0.4 2,577,655 + DvMF_2075 0.76 +0.1 2,577,656 - DvMF_2075 0.76 -0.7 2,577,882 + -0.1 2,577,926 + +0.3 2,577,932 - +0.2 2,577,932 - -0.5 2,577,934 - -0.0 2,577,936 + +0.6 2,578,024 + +0.5 2,578,079 - +0.5 2,578,278 + +0.2 2,578,485 - +1.3 2,578,502 - -0.2 2,578,582 + -0.5 2,578,794 - DvMF_2076 0.33 +0.4 2,578,920 + DvMF_2076 0.56 +0.3 2,578,936 - DvMF_2076 0.59 -0.4 2,578,971 - DvMF_2076 0.65 -0.2
Or see this region's nucleotide sequence