Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2075

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2074 and DvMF_2075 are separated by 652 nucleotidesDvMF_2075 and DvMF_2076 are separated by 571 nucleotides DvMF_2074: DvMF_2074 - glycosyl transferase family 2 (RefSeq), at 2,574,675 to 2,575,799 _2074 DvMF_2075: DvMF_2075 - fumarate hydratase, class II (RefSeq), at 2,576,452 to 2,578,038 _2075 DvMF_2076: DvMF_2076 - GPR1/FUN34/yaaH family protein (RefSeq), at 2,578,610 to 2,579,161 _2076 Position (kb) 2576 2577 2578 2579Strain fitness (log2 ratio) -1 0 1at 2575.532 kb on + strand, within DvMF_2074at 2575.640 kb on + strand, within DvMF_2074at 2575.662 kb on + strand, within DvMF_2074at 2575.704 kb on - strandat 2575.746 kb on - strandat 2575.964 kb on - strandat 2575.966 kb on + strandat 2576.015 kb on + strandat 2576.089 kb on - strandat 2576.123 kb on + strandat 2576.268 kb on - strandat 2576.371 kb on - strandat 2576.470 kb on - strandat 2576.472 kb on + strandat 2576.506 kb on - strandat 2576.605 kb on - strandat 2576.613 kb on + strand, within DvMF_2075at 2576.680 kb on + strand, within DvMF_2075at 2576.684 kb on + strand, within DvMF_2075at 2576.755 kb on + strand, within DvMF_2075at 2576.834 kb on + strand, within DvMF_2075at 2576.958 kb on - strand, within DvMF_2075at 2577.052 kb on + strand, within DvMF_2075at 2577.070 kb on + strand, within DvMF_2075at 2577.346 kb on + strand, within DvMF_2075at 2577.361 kb on - strand, within DvMF_2075at 2577.457 kb on - strand, within DvMF_2075at 2577.462 kb on - strand, within DvMF_2075at 2577.589 kb on + strand, within DvMF_2075at 2577.603 kb on + strand, within DvMF_2075at 2577.608 kb on + strand, within DvMF_2075at 2577.611 kb on - strand, within DvMF_2075at 2577.611 kb on - strand, within DvMF_2075at 2577.648 kb on + strand, within DvMF_2075at 2577.655 kb on + strand, within DvMF_2075at 2577.656 kb on - strand, within DvMF_2075at 2577.882 kb on + strandat 2577.926 kb on + strandat 2577.932 kb on - strandat 2577.932 kb on - strandat 2577.934 kb on - strandat 2577.936 kb on + strandat 2578.024 kb on + strandat 2578.079 kb on - strandat 2578.278 kb on + strandat 2578.485 kb on - strandat 2578.502 kb on - strandat 2578.582 kb on + strandat 2578.794 kb on - strand, within DvMF_2076at 2578.920 kb on + strand, within DvMF_2076at 2578.936 kb on - strand, within DvMF_2076at 2578.971 kb on - strand, within DvMF_2076

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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2,575,532 + DvMF_2074 0.76 -0.2
2,575,640 + DvMF_2074 0.86 -0.5
2,575,662 + DvMF_2074 0.88 -0.4
2,575,704 - -0.2
2,575,746 - -0.4
2,575,964 - -0.3
2,575,966 + -0.1
2,576,015 + -0.9
2,576,089 - +0.3
2,576,123 + +0.2
2,576,268 - -1.1
2,576,371 - -0.8
2,576,470 - +0.5
2,576,472 + +0.3
2,576,506 - +0.5
2,576,605 - -0.2
2,576,613 + DvMF_2075 0.10 -0.2
2,576,680 + DvMF_2075 0.14 -0.7
2,576,684 + DvMF_2075 0.15 -0.5
2,576,755 + DvMF_2075 0.19 +0.2
2,576,834 + DvMF_2075 0.24 -0.2
2,576,958 - DvMF_2075 0.32 +0.6
2,577,052 + DvMF_2075 0.38 -0.1
2,577,070 + DvMF_2075 0.39 +1.1
2,577,346 + DvMF_2075 0.56 -0.0
2,577,361 - DvMF_2075 0.57 -0.3
2,577,457 - DvMF_2075 0.63 -0.3
2,577,462 - DvMF_2075 0.64 +0.2
2,577,589 + DvMF_2075 0.72 +0.0
2,577,603 + DvMF_2075 0.73 +0.0
2,577,608 + DvMF_2075 0.73 +0.0
2,577,611 - DvMF_2075 0.73 +0.3
2,577,611 - DvMF_2075 0.73 +0.7
2,577,648 + DvMF_2075 0.75 +0.4
2,577,655 + DvMF_2075 0.76 +0.1
2,577,656 - DvMF_2075 0.76 -0.7
2,577,882 + -0.1
2,577,926 + +0.3
2,577,932 - +0.2
2,577,932 - -0.5
2,577,934 - -0.0
2,577,936 + +0.6
2,578,024 + +0.5
2,578,079 - +0.5
2,578,278 + +0.2
2,578,485 - +1.3
2,578,502 - -0.2
2,578,582 + -0.5
2,578,794 - DvMF_2076 0.33 +0.4
2,578,920 + DvMF_2076 0.56 +0.3
2,578,936 - DvMF_2076 0.59 -0.4
2,578,971 - DvMF_2076 0.65 -0.2

Or see this region's nucleotide sequence