Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2059

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2058 and DvMF_2059 are separated by 281 nucleotidesDvMF_2059 and DvMF_2060 are separated by 377 nucleotidesDvMF_2060 and DvMF_2061 overlap by 4 nucleotides DvMF_2058: DvMF_2058 - putative superfamily I DNA and RNA helicase protein (RefSeq), at 2,549,908 to 2,555,493 _2058 DvMF_2059: DvMF_2059 - hypothetical protein (RefSeq), at 2,555,775 to 2,556,065 _2059 DvMF_2060: DvMF_2060 - small multidrug resistance protein (RefSeq), at 2,556,443 to 2,556,850 _2060 DvMF_2061: DvMF_2061 - small multidrug resistance protein (RefSeq), at 2,556,847 to 2,557,176 _2061 Position (kb) 2555 2556 2557Strain fitness (log2 ratio) -1 0 1at 2555.011 kb on + strandat 2555.117 kb on + strandat 2555.217 kb on + strandat 2555.316 kb on - strandat 2555.708 kb on + strandat 2555.708 kb on + strandat 2555.716 kb on - strandat 2555.716 kb on - strandat 2555.808 kb on - strand, within DvMF_2059at 2556.033 kb on + strand, within DvMF_2059at 2556.051 kb on - strandat 2556.233 kb on - strandat 2556.462 kb on + strandat 2556.470 kb on - strandat 2556.470 kb on - strandat 2556.730 kb on + strand, within DvMF_2060at 2556.749 kb on + strand, within DvMF_2060at 2556.773 kb on + strand, within DvMF_2060at 2556.853 kb on - strandat 2556.903 kb on - strand, within DvMF_2061at 2556.916 kb on - strand, within DvMF_2061at 2556.938 kb on + strand, within DvMF_2061at 2557.011 kb on - strand, within DvMF_2061

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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2,555,011 + +0.0
2,555,117 + +0.7
2,555,217 + -0.5
2,555,316 - -0.2
2,555,708 + -0.3
2,555,708 + -0.4
2,555,716 - -1.4
2,555,716 - -1.1
2,555,808 - DvMF_2059 0.11 -0.5
2,556,033 + DvMF_2059 0.89 -0.9
2,556,051 - +0.1
2,556,233 - -1.2
2,556,462 + -0.7
2,556,470 - -0.2
2,556,470 - +0.1
2,556,730 + DvMF_2060 0.70 -0.8
2,556,749 + DvMF_2060 0.75 +0.3
2,556,773 + DvMF_2060 0.81 -0.5
2,556,853 - -0.6
2,556,903 - DvMF_2061 0.17 -1.5
2,556,916 - DvMF_2061 0.21 +0.1
2,556,938 + DvMF_2061 0.28 -0.7
2,557,011 - DvMF_2061 0.50 -0.4

Or see this region's nucleotide sequence