Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2027

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2026 and DvMF_2027 are separated by 222 nucleotidesDvMF_2027 and DvMF_2028 are separated by 228 nucleotides DvMF_2026: DvMF_2026 - Fmu (Sun) domain protein (RefSeq), at 2,510,451 to 2,511,794 _2026 DvMF_2027: DvMF_2027 - inositol monophosphatase (RefSeq), at 2,512,017 to 2,512,979 _2027 DvMF_2028: DvMF_2028 - NLP/P60 protein (RefSeq), at 2,513,208 to 2,513,909 _2028 Position (kb) 2512 2513Strain fitness (log2 ratio) -2 -1 0 1at 2511.173 kb on - strand, within DvMF_2026at 2511.275 kb on + strand, within DvMF_2026at 2511.321 kb on + strand, within DvMF_2026at 2511.538 kb on + strand, within DvMF_2026at 2511.586 kb on + strand, within DvMF_2026at 2511.680 kb on - strandat 2511.725 kb on + strandat 2511.796 kb on - strandat 2511.823 kb on - strandat 2511.905 kb on + strandat 2511.913 kb on - strandat 2511.913 kb on - strandat 2512.023 kb on - strandat 2512.438 kb on + strand, within DvMF_2027at 2512.565 kb on + strand, within DvMF_2027at 2512.741 kb on - strand, within DvMF_2027at 2512.896 kb on + strandat 2512.950 kb on + strandat 2512.950 kb on - strandat 2512.952 kb on + strandat 2513.160 kb on - strandat 2513.247 kb on + strandat 2513.337 kb on + strand, within DvMF_2028at 2513.405 kb on - strand, within DvMF_2028at 2513.552 kb on + strand, within DvMF_2028at 2513.580 kb on + strand, within DvMF_2028at 2513.590 kb on + strand, within DvMF_2028at 2513.634 kb on - strand, within DvMF_2028at 2513.699 kb on - strand, within DvMF_2028at 2513.747 kb on + strand, within DvMF_2028at 2513.755 kb on - strand, within DvMF_2028at 2513.788 kb on + strand, within DvMF_2028at 2513.903 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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2,511,173 - DvMF_2026 0.54 -0.7
2,511,275 + DvMF_2026 0.61 -2.5
2,511,321 + DvMF_2026 0.65 -0.9
2,511,538 + DvMF_2026 0.81 -0.8
2,511,586 + DvMF_2026 0.84 -1.3
2,511,680 - -1.6
2,511,725 + -0.5
2,511,796 - -1.6
2,511,823 - -0.6
2,511,905 + -0.9
2,511,913 - -0.7
2,511,913 - -0.9
2,512,023 - +0.5
2,512,438 + DvMF_2027 0.44 -1.6
2,512,565 + DvMF_2027 0.57 -0.6
2,512,741 - DvMF_2027 0.75 -1.4
2,512,896 + -1.1
2,512,950 + -0.3
2,512,950 - +1.4
2,512,952 + +0.3
2,513,160 - -0.8
2,513,247 + -0.7
2,513,337 + DvMF_2028 0.18 -0.1
2,513,405 - DvMF_2028 0.28 -0.3
2,513,552 + DvMF_2028 0.49 -0.9
2,513,580 + DvMF_2028 0.53 -1.1
2,513,590 + DvMF_2028 0.54 -0.8
2,513,634 - DvMF_2028 0.61 -1.1
2,513,699 - DvMF_2028 0.70 -0.1
2,513,747 + DvMF_2028 0.77 -0.2
2,513,755 - DvMF_2028 0.78 -1.1
2,513,788 + DvMF_2028 0.83 -1.0
2,513,903 + -0.9

Or see this region's nucleotide sequence