Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1885

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1884 and DvMF_1885 are separated by 276 nucleotidesDvMF_1885 and DvMF_1886 are separated by 688 nucleotides DvMF_1884: DvMF_1884 - type IV pilus assembly PilZ (RefSeq), at 2,321,193 to 2,321,537 _1884 DvMF_1885: DvMF_1885 - hypothetical protein (RefSeq), at 2,321,814 to 2,322,383 _1885 DvMF_1886: DvMF_1886 - HesB/YadR/YfhF-family protein (RefSeq), at 2,323,072 to 2,323,395 _1886 Position (kb) 2321 2322 2323Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2320.975 kb on + strandat 2321.294 kb on - strand, within DvMF_1884at 2321.358 kb on + strand, within DvMF_1884at 2321.358 kb on + strand, within DvMF_1884at 2321.726 kb on - strandat 2322.093 kb on + strand, within DvMF_1885at 2322.184 kb on - strand, within DvMF_1885at 2322.227 kb on - strand, within DvMF_1885at 2322.534 kb on + strandat 2322.552 kb on - strandat 2322.685 kb on + strandat 2322.709 kb on + strandat 2322.713 kb on - strandat 2322.931 kb on - strandat 2323.152 kb on - strand, within DvMF_1886at 2323.184 kb on + strand, within DvMF_1886at 2323.292 kb on - strand, within DvMF_1886

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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2,320,975 + -1.8
2,321,294 - DvMF_1884 0.29 -1.3
2,321,358 + DvMF_1884 0.48 -1.6
2,321,358 + DvMF_1884 0.48 -0.9
2,321,726 - -0.9
2,322,093 + DvMF_1885 0.49 -2.9
2,322,184 - DvMF_1885 0.65 -1.3
2,322,227 - DvMF_1885 0.72 -1.1
2,322,534 + -1.2
2,322,552 - +2.8
2,322,685 + -2.4
2,322,709 + -2.0
2,322,713 - -0.6
2,322,931 - -0.2
2,323,152 - DvMF_1886 0.25 +0.1
2,323,184 + DvMF_1886 0.35 -0.0
2,323,292 - DvMF_1886 0.68 -2.8

Or see this region's nucleotide sequence