Experiment: MoYLS4 with Lomefloxacin 0.00156 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1865 and DvMF_1866 are separated by 156 nucleotides DvMF_1866 and DvMF_1867 are separated by 136 nucleotides DvMF_1867 and DvMF_1868 are separated by 4 nucleotides
DvMF_1865: DvMF_1865 - acetate kinase (RefSeq), at 2,288,798 to 2,290,012
_1865
DvMF_1866: DvMF_1866 - DRTGG domain protein (RefSeq), at 2,290,169 to 2,291,230
_1866
DvMF_1867: DvMF_1867 - protein of unknown function DUF162 (RefSeq), at 2,291,367 to 2,291,996
_1867
DvMF_1868: DvMF_1868 - protein of unknown function DUF162 (RefSeq), at 2,292,001 to 2,294,151
_1868
Position (kb)
2290
2291
2292 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2290.136 kb on + strand at 2290.349 kb on - strand, within DvMF_1866 at 2290.548 kb on + strand, within DvMF_1866 at 2290.572 kb on + strand, within DvMF_1866 at 2290.697 kb on - strand, within DvMF_1866 at 2290.884 kb on - strand, within DvMF_1866 at 2291.130 kb on + strand at 2291.138 kb on - strand at 2291.149 kb on + strand at 2291.369 kb on - strand at 2291.369 kb on - strand at 2291.537 kb on + strand, within DvMF_1867 at 2291.544 kb on + strand, within DvMF_1867 at 2291.563 kb on - strand, within DvMF_1867 at 2291.950 kb on - strand at 2292.084 kb on - strand at 2292.213 kb on + strand at 2292.221 kb on - strand, within DvMF_1868 at 2292.221 kb on - strand, within DvMF_1868
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM remove 2,290,136 + -3.3 2,290,349 - DvMF_1866 0.17 -1.5 2,290,548 + DvMF_1866 0.36 -2.5 2,290,572 + DvMF_1866 0.38 -3.2 2,290,697 - DvMF_1866 0.50 -1.4 2,290,884 - DvMF_1866 0.67 -2.3 2,291,130 + -0.9 2,291,138 - -1.6 2,291,149 + -0.5 2,291,369 - -1.2 2,291,369 - -3.2 2,291,537 + DvMF_1867 0.27 +1.0 2,291,544 + DvMF_1867 0.28 -3.4 2,291,563 - DvMF_1867 0.31 -0.6 2,291,950 - +0.3 2,292,084 - -0.9 2,292,213 + -1.4 2,292,221 - DvMF_1868 0.10 -1.4 2,292,221 - DvMF_1868 0.10 -2.3
Or see this region's nucleotide sequence