Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1697

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1696 and DvMF_1697 are separated by 463 nucleotidesDvMF_1697 and DvMF_1698 are separated by 303 nucleotides DvMF_1696: DvMF_1696 - Phosphoglycerate mutase (RefSeq), at 2,066,887 to 2,068,095 _1696 DvMF_1697: DvMF_1697 - hypothetical protein (RefSeq), at 2,068,559 to 2,068,888 _1697 DvMF_1698: DvMF_1698 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,069,192 to 2,072,083 _1698 Position (kb) 2068 2069Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2067.611 kb on - strand, within DvMF_1696at 2067.856 kb on - strand, within DvMF_1696at 2067.980 kb on + strandat 2068.049 kb on - strandat 2068.154 kb on + strandat 2068.219 kb on + strandat 2068.220 kb on + strandat 2068.220 kb on + strandat 2068.238 kb on - strandat 2068.240 kb on + strandat 2068.240 kb on + strandat 2068.248 kb on - strandat 2068.412 kb on - strandat 2068.492 kb on + strandat 2068.674 kb on + strand, within DvMF_1697at 2068.674 kb on + strand, within DvMF_1697at 2068.801 kb on - strand, within DvMF_1697at 2068.834 kb on + strand, within DvMF_1697at 2068.849 kb on - strand, within DvMF_1697at 2069.092 kb on + strandat 2069.254 kb on + strandat 2069.262 kb on - strandat 2069.444 kb on - strandat 2069.508 kb on + strand, within DvMF_1698at 2069.632 kb on - strand, within DvMF_1698at 2069.757 kb on - strand, within DvMF_1698at 2069.810 kb on + strand, within DvMF_1698at 2069.818 kb on - strand, within DvMF_1698

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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2,067,611 - DvMF_1696 0.60 +0.5
2,067,856 - DvMF_1696 0.80 -3.2
2,067,980 + -0.8
2,068,049 - +0.3
2,068,154 + -0.9
2,068,219 + -0.9
2,068,220 + -3.5
2,068,220 + -0.7
2,068,238 - -1.0
2,068,240 + -3.1
2,068,240 + -1.0
2,068,248 - -1.5
2,068,412 - -1.1
2,068,492 + -1.0
2,068,674 + DvMF_1697 0.35 -0.2
2,068,674 + DvMF_1697 0.35 -1.3
2,068,801 - DvMF_1697 0.73 -0.2
2,068,834 + DvMF_1697 0.83 -1.7
2,068,849 - DvMF_1697 0.88 -0.7
2,069,092 + -3.8
2,069,254 + -1.0
2,069,262 - -0.9
2,069,444 - -0.5
2,069,508 + DvMF_1698 0.11 -1.0
2,069,632 - DvMF_1698 0.15 -0.2
2,069,757 - DvMF_1698 0.20 -2.0
2,069,810 + DvMF_1698 0.21 -1.2
2,069,818 - DvMF_1698 0.22 -0.8

Or see this region's nucleotide sequence