Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1695

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1694 and DvMF_1695 are separated by 2 nucleotidesDvMF_1695 and DvMF_1696 are separated by 432 nucleotides DvMF_1694: DvMF_1694 - cytochrome c family protein (RefSeq), at 2,064,128 to 2,065,822 _1694 DvMF_1695: DvMF_1695 - cytochrome B561 (RefSeq), at 2,065,825 to 2,066,454 _1695 DvMF_1696: DvMF_1696 - Phosphoglycerate mutase (RefSeq), at 2,066,887 to 2,068,095 _1696 Position (kb) 2065 2066 2067Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2064.951 kb on + strand, within DvMF_1694at 2064.951 kb on + strand, within DvMF_1694at 2064.959 kb on - strand, within DvMF_1694at 2064.959 kb on - strand, within DvMF_1694at 2065.106 kb on + strand, within DvMF_1694at 2065.177 kb on + strand, within DvMF_1694at 2065.482 kb on - strand, within DvMF_1694at 2065.590 kb on - strand, within DvMF_1694at 2065.877 kb on - strandat 2065.936 kb on + strand, within DvMF_1695at 2066.005 kb on + strand, within DvMF_1695at 2066.077 kb on - strand, within DvMF_1695at 2066.132 kb on - strand, within DvMF_1695at 2066.132 kb on - strand, within DvMF_1695at 2066.287 kb on - strand, within DvMF_1695at 2066.374 kb on - strand, within DvMF_1695at 2066.376 kb on + strand, within DvMF_1695at 2066.459 kb on - strandat 2066.570 kb on - strandat 2066.835 kb on - strandat 2066.879 kb on + strandat 2067.119 kb on - strand, within DvMF_1696at 2067.119 kb on - strand, within DvMF_1696at 2067.124 kb on - strand, within DvMF_1696at 2067.239 kb on - strand, within DvMF_1696at 2067.380 kb on + strand, within DvMF_1696at 2067.380 kb on + strand, within DvMF_1696

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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2,064,951 + DvMF_1694 0.49 -1.2
2,064,951 + DvMF_1694 0.49 -1.0
2,064,959 - DvMF_1694 0.49 +0.2
2,064,959 - DvMF_1694 0.49 -0.5
2,065,106 + DvMF_1694 0.58 -3.1
2,065,177 + DvMF_1694 0.62 -1.6
2,065,482 - DvMF_1694 0.80 -3.8
2,065,590 - DvMF_1694 0.86 -1.2
2,065,877 - -0.4
2,065,936 + DvMF_1695 0.18 +0.4
2,066,005 + DvMF_1695 0.29 -1.9
2,066,077 - DvMF_1695 0.40 +0.2
2,066,132 - DvMF_1695 0.49 +0.8
2,066,132 - DvMF_1695 0.49 -1.2
2,066,287 - DvMF_1695 0.73 -0.7
2,066,374 - DvMF_1695 0.87 -0.8
2,066,376 + DvMF_1695 0.87 -0.9
2,066,459 - -3.2
2,066,570 - -2.1
2,066,835 - -1.8
2,066,879 + -0.3
2,067,119 - DvMF_1696 0.19 -1.4
2,067,119 - DvMF_1696 0.19 -1.0
2,067,124 - DvMF_1696 0.20 -1.4
2,067,239 - DvMF_1696 0.29 -0.8
2,067,380 + DvMF_1696 0.41 -0.4
2,067,380 + DvMF_1696 0.41 -0.3

Or see this region's nucleotide sequence