Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1656

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1655 and DvMF_1656 are separated by 12 nucleotidesDvMF_1656 and DvMF_1657 overlap by 14 nucleotides DvMF_1655: DvMF_1655 - phage major capsid protein, HK97 family (RefSeq), at 2,031,821 to 2,033,041 _1655 DvMF_1656: DvMF_1656 - phage prohead protease, HK97 family (RefSeq), at 2,033,054 to 2,033,755 _1656 DvMF_1657: DvMF_1657 - phage portal protein, HK97 family (RefSeq), at 2,033,742 to 2,034,968 _1657 Position (kb) 2033 2034Strain fitness (log2 ratio) -2 -1 0 1at 2032.079 kb on - strand, within DvMF_1655at 2032.483 kb on - strand, within DvMF_1655at 2032.613 kb on + strand, within DvMF_1655at 2032.794 kb on + strand, within DvMF_1655at 2032.802 kb on - strand, within DvMF_1655at 2032.853 kb on - strand, within DvMF_1655at 2032.854 kb on + strand, within DvMF_1655at 2032.868 kb on + strand, within DvMF_1655at 2032.946 kb on - strandat 2033.045 kb on - strandat 2033.045 kb on - strandat 2033.241 kb on + strand, within DvMF_1656at 2033.586 kb on + strand, within DvMF_1656at 2033.586 kb on + strand, within DvMF_1656at 2033.645 kb on - strand, within DvMF_1656at 2033.734 kb on + strandat 2033.977 kb on - strand, within DvMF_1657at 2034.028 kb on + strand, within DvMF_1657at 2034.043 kb on - strand, within DvMF_1657at 2034.043 kb on - strand, within DvMF_1657at 2034.049 kb on - strand, within DvMF_1657at 2034.088 kb on + strand, within DvMF_1657at 2034.168 kb on + strand, within DvMF_1657at 2034.452 kb on - strand, within DvMF_1657at 2034.480 kb on - strand, within DvMF_1657at 2034.600 kb on + strand, within DvMF_1657at 2034.692 kb on + strand, within DvMF_1657

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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2,032,079 - DvMF_1655 0.21 -0.4
2,032,483 - DvMF_1655 0.54 +0.3
2,032,613 + DvMF_1655 0.65 -1.8
2,032,794 + DvMF_1655 0.80 -0.6
2,032,802 - DvMF_1655 0.80 -1.4
2,032,853 - DvMF_1655 0.85 +0.0
2,032,854 + DvMF_1655 0.85 -0.6
2,032,868 + DvMF_1655 0.86 +0.2
2,032,946 - +1.0
2,033,045 - -0.9
2,033,045 - +1.2
2,033,241 + DvMF_1656 0.27 -0.4
2,033,586 + DvMF_1656 0.76 -1.5
2,033,586 + DvMF_1656 0.76 +0.4
2,033,645 - DvMF_1656 0.84 +0.7
2,033,734 + -1.0
2,033,977 - DvMF_1657 0.19 +1.1
2,034,028 + DvMF_1657 0.23 -1.0
2,034,043 - DvMF_1657 0.25 -0.5
2,034,043 - DvMF_1657 0.25 -1.8
2,034,049 - DvMF_1657 0.25 -1.8
2,034,088 + DvMF_1657 0.28 -2.1
2,034,168 + DvMF_1657 0.35 -1.0
2,034,452 - DvMF_1657 0.58 -0.0
2,034,480 - DvMF_1657 0.60 -0.2
2,034,600 + DvMF_1657 0.70 -1.7
2,034,692 + DvMF_1657 0.77 -0.5

Or see this region's nucleotide sequence