Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1323

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1322 and DvMF_1323 are separated by 377 nucleotidesDvMF_1323 and DvMF_1324 are separated by 837 nucleotides DvMF_1322: DvMF_1322 - protein of unknown function DUF1078 domain protein (RefSeq), at 1,613,796 to 1,614,206 _1322 DvMF_1323: DvMF_1323 - Auxin Efflux Carrier (RefSeq), at 1,614,584 to 1,615,597 _1323 DvMF_1324: DvMF_1324 - sigma54 specific transcriptional regulator, Fis family (RefSeq), at 1,616,435 to 1,617,487 _1324 Position (kb) 1614 1615 1616Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1613.751 kb on + strandat 1614.194 kb on - strandat 1614.201 kb on + strandat 1614.516 kb on + strandat 1614.522 kb on + strandat 1614.688 kb on + strand, within DvMF_1323at 1614.798 kb on - strand, within DvMF_1323at 1615.158 kb on + strand, within DvMF_1323at 1615.243 kb on + strand, within DvMF_1323at 1615.644 kb on + strandat 1615.694 kb on + strandat 1615.790 kb on - strandat 1615.915 kb on - strandat 1616.533 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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1,613,751 + +0.6
1,614,194 - -1.2
1,614,201 + -0.6
1,614,516 + -0.2
1,614,522 + -2.4
1,614,688 + DvMF_1323 0.10 -1.7
1,614,798 - DvMF_1323 0.21 -2.0
1,615,158 + DvMF_1323 0.57 -1.1
1,615,243 + DvMF_1323 0.65 -1.6
1,615,644 + -3.8
1,615,694 + +0.1
1,615,790 - -0.9
1,615,915 - -1.3
1,616,533 + -0.6

Or see this region's nucleotide sequence