Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1246

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1245 and DvMF_1246 are separated by 537 nucleotidesDvMF_1246 and DvMF_1247 are separated by 358 nucleotides DvMF_1245: DvMF_1245 - molybdopterin oxidoreductase (RefSeq), at 1,536,607 to 1,539,450 _1245 DvMF_1246: DvMF_1246 - D-alanine--D-alanine ligase (RefSeq), at 1,539,988 to 1,541,214 _1246 DvMF_1247: DvMF_1247 - alpha/beta hydrolase fold protein (RefSeq), at 1,541,573 to 1,542,517 _1247 Position (kb) 1539 1540 1541 1542Strain fitness (log2 ratio) -3 -2 -1 0 1at 1539.010 kb on + strand, within DvMF_1245at 1539.189 kb on - strandat 1539.418 kb on + strandat 1539.504 kb on + strandat 1539.523 kb on + strandat 1539.531 kb on - strandat 1539.531 kb on - strandat 1539.596 kb on + strandat 1539.664 kb on - strandat 1539.678 kb on + strandat 1541.329 kb on + strandat 1541.330 kb on - strandat 1541.346 kb on + strandat 1541.369 kb on - strandat 1541.390 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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1,539,010 + DvMF_1245 0.84 -1.0
1,539,189 - -2.5
1,539,418 + -2.4
1,539,504 + -0.9
1,539,523 + -0.7
1,539,531 - -3.3
1,539,531 - -1.4
1,539,596 + -2.8
1,539,664 - -2.5
1,539,678 + -0.7
1,541,329 + -0.8
1,541,330 - -0.2
1,541,346 + -1.0
1,541,369 - -2.0
1,541,390 + -0.6

Or see this region's nucleotide sequence