Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1179

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1178 and DvMF_1179 overlap by 17 nucleotidesDvMF_1179 and DvMF_1180 are separated by 224 nucleotides DvMF_1178: DvMF_1178 - multicopper oxidase type 3 (RefSeq), at 1,455,576 to 1,457,303 _1178 DvMF_1179: DvMF_1179 - extracellular solute-binding protein family 3 (RefSeq), at 1,457,287 to 1,458,444 _1179 DvMF_1180: DvMF_1180 - hypothetical protein (RefSeq), at 1,458,669 to 1,459,139 _1180 Position (kb) 1457 1458 1459Strain fitness (log2 ratio) -3 -2 -1 0 1at 1456.297 kb on + strand, within DvMF_1178at 1456.506 kb on - strand, within DvMF_1178at 1456.511 kb on - strand, within DvMF_1178at 1456.682 kb on + strand, within DvMF_1178at 1457.359 kb on - strandat 1457.374 kb on + strandat 1457.388 kb on - strandat 1457.388 kb on - strandat 1457.743 kb on - strand, within DvMF_1179at 1457.762 kb on - strand, within DvMF_1179at 1457.799 kb on - strand, within DvMF_1179at 1457.889 kb on + strand, within DvMF_1179at 1458.104 kb on + strand, within DvMF_1179at 1458.265 kb on + strand, within DvMF_1179at 1458.497 kb on - strandat 1458.532 kb on + strandat 1458.533 kb on - strandat 1458.630 kb on + strandat 1458.864 kb on - strand, within DvMF_1180at 1459.142 kb on + strandat 1459.355 kb on - strandat 1459.355 kb on - strandat 1459.355 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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1,456,297 + DvMF_1178 0.42 -1.2
1,456,506 - DvMF_1178 0.54 -1.6
1,456,511 - DvMF_1178 0.54 +0.5
1,456,682 + DvMF_1178 0.64 -1.5
1,457,359 - -1.3
1,457,374 + -0.2
1,457,388 - +0.8
1,457,388 - -0.7
1,457,743 - DvMF_1179 0.39 -2.2
1,457,762 - DvMF_1179 0.41 -1.1
1,457,799 - DvMF_1179 0.44 -2.8
1,457,889 + DvMF_1179 0.52 -1.1
1,458,104 + DvMF_1179 0.71 -1.5
1,458,265 + DvMF_1179 0.84 -0.9
1,458,497 - -0.2
1,458,532 + -0.8
1,458,533 - -1.4
1,458,630 + -1.1
1,458,864 - DvMF_1180 0.41 -2.9
1,459,142 + -2.0
1,459,355 - -2.8
1,459,355 - -1.9
1,459,355 - -0.2

Or see this region's nucleotide sequence