Experiment: MoYLS4 with Lomefloxacin 0.00156 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1039 and DvMF_1040 are separated by 455 nucleotides DvMF_1040 and DvMF_1041 are separated by 213 nucleotides
DvMF_1039: DvMF_1039 - Type II secretory pathway component ExeA (predicted ATPase)-like protein (RefSeq), at 1,261,238 to 1,263,280
_1039
DvMF_1040: DvMF_1040 - PhoH family protein (RefSeq), at 1,263,736 to 1,265,313
_1040
DvMF_1041: DvMF_1041 - monofunctional biosynthetic peptidoglycan transglycosylase (RefSeq), at 1,265,527 to 1,266,822
_1041
Position (kb)
1263
1264
1265
1266 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1263.123 kb on - strand at 1263.415 kb on - strand at 1263.602 kb on + strand at 1264.221 kb on + strand, within DvMF_1040 at 1264.346 kb on + strand, within DvMF_1040 at 1264.354 kb on - strand, within DvMF_1040 at 1264.354 kb on - strand, within DvMF_1040 at 1264.437 kb on + strand, within DvMF_1040 at 1264.490 kb on + strand, within DvMF_1040 at 1264.586 kb on - strand, within DvMF_1040 at 1264.748 kb on - strand, within DvMF_1040 at 1264.749 kb on - strand, within DvMF_1040 at 1264.756 kb on + strand, within DvMF_1040 at 1264.981 kb on - strand, within DvMF_1040 at 1265.003 kb on - strand, within DvMF_1040 at 1265.052 kb on - strand, within DvMF_1040 at 1265.114 kb on + strand, within DvMF_1040 at 1265.173 kb on + strand at 1265.181 kb on - strand at 1265.181 kb on - strand at 1265.608 kb on - strand at 1265.633 kb on + strand at 1266.270 kb on + strand, within DvMF_1041 at 1266.308 kb on + strand, within DvMF_1041
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM remove 1,263,123 - -1.4 1,263,415 - -0.5 1,263,602 + -0.3 1,264,221 + DvMF_1040 0.31 -0.7 1,264,346 + DvMF_1040 0.39 -3.4 1,264,354 - DvMF_1040 0.39 -0.6 1,264,354 - DvMF_1040 0.39 -1.9 1,264,437 + DvMF_1040 0.44 -0.8 1,264,490 + DvMF_1040 0.48 -0.3 1,264,586 - DvMF_1040 0.54 -1.0 1,264,748 - DvMF_1040 0.64 -0.2 1,264,749 - DvMF_1040 0.64 -0.5 1,264,756 + DvMF_1040 0.65 -1.5 1,264,981 - DvMF_1040 0.79 -2.6 1,265,003 - DvMF_1040 0.80 -1.1 1,265,052 - DvMF_1040 0.83 -1.0 1,265,114 + DvMF_1040 0.87 -0.8 1,265,173 + -2.2 1,265,181 - +1.7 1,265,181 - -1.3 1,265,608 - -0.7 1,265,633 + -0.9 1,266,270 + DvMF_1041 0.57 -2.2 1,266,308 + DvMF_1041 0.60 -3.3
Or see this region's nucleotide sequence