Experiment: MoYLS4 with Lomefloxacin 0.00156 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0918 and DvMF_0919 are separated by 22 nucleotides DvMF_0919 and DvMF_0920 are separated by 144 nucleotides DvMF_0920 and DvMF_0921 overlap by 4 nucleotides DvMF_0921 and DvMF_0922 are separated by 3 nucleotides
DvMF_0918: DvMF_0918 - hypothetical protein (RefSeq), at 1,110,689 to 1,111,306
_0918
DvMF_0919: DvMF_0919 - hypothetical protein (RefSeq), at 1,111,329 to 1,111,865
_0919
DvMF_0920: DvMF_0920 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,112,010 to 1,113,041
_0920
DvMF_0921: DvMF_0921 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,113,038 to 1,113,892
_0921
DvMF_0922: DvMF_0922 - hypothetical protein (RefSeq), at 1,113,896 to 1,115,659
_0922
Position (kb)
1112
1113
1114 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1111.108 kb on + strand, within DvMF_0918 at 1111.450 kb on + strand, within DvMF_0919 at 1111.462 kb on + strand, within DvMF_0919 at 1111.529 kb on - strand, within DvMF_0919 at 1111.560 kb on + strand, within DvMF_0919 at 1111.816 kb on + strand at 1111.868 kb on - strand at 1112.189 kb on - strand, within DvMF_0920 at 1112.203 kb on - strand, within DvMF_0920 at 1112.417 kb on + strand, within DvMF_0920 at 1112.477 kb on - strand, within DvMF_0920 at 1112.601 kb on + strand, within DvMF_0920 at 1112.687 kb on - strand, within DvMF_0920 at 1112.699 kb on + strand, within DvMF_0920 at 1112.699 kb on + strand, within DvMF_0920 at 1112.707 kb on - strand, within DvMF_0920 at 1112.891 kb on + strand, within DvMF_0920 at 1113.063 kb on - strand at 1113.105 kb on + strand at 1113.406 kb on + strand, within DvMF_0921 at 1113.540 kb on + strand, within DvMF_0921 at 1113.695 kb on + strand, within DvMF_0921 at 1113.703 kb on - strand, within DvMF_0921 at 1113.728 kb on + strand, within DvMF_0921
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM remove 1,111,108 + DvMF_0918 0.68 +1.3 1,111,450 + DvMF_0919 0.23 -1.4 1,111,462 + DvMF_0919 0.25 +0.1 1,111,529 - DvMF_0919 0.37 -1.1 1,111,560 + DvMF_0919 0.43 -2.5 1,111,816 + +0.4 1,111,868 - -2.0 1,112,189 - DvMF_0920 0.17 -1.7 1,112,203 - DvMF_0920 0.19 -0.7 1,112,417 + DvMF_0920 0.39 -2.5 1,112,477 - DvMF_0920 0.45 -0.3 1,112,601 + DvMF_0920 0.57 -1.5 1,112,687 - DvMF_0920 0.66 -3.3 1,112,699 + DvMF_0920 0.67 -1.3 1,112,699 + DvMF_0920 0.67 -3.1 1,112,707 - DvMF_0920 0.68 -1.2 1,112,891 + DvMF_0920 0.85 -4.5 1,113,063 - -2.2 1,113,105 + -0.7 1,113,406 + DvMF_0921 0.43 -3.2 1,113,540 + DvMF_0921 0.59 -0.6 1,113,695 + DvMF_0921 0.77 -0.7 1,113,703 - DvMF_0921 0.78 -1.9 1,113,728 + DvMF_0921 0.81 -1.9
Or see this region's nucleotide sequence