Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0877

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrecA and alaS are separated by 104 nucleotidesalaS and DvMF_0878 are separated by 387 nucleotides DvMF_0876: recA - recombinase A (RefSeq), at 1,056,936 to 1,058,009 recA DvMF_0877: alaS - alanyl-tRNA synthetase (RefSeq), at 1,058,114 to 1,060,753 alaS DvMF_0878: DvMF_0878 - protein of unknown function UPF0052 and CofD (RefSeq), at 1,061,141 to 1,062,562 _0878 Position (kb) 1058 1059 1060 1061Strain fitness (log2 ratio) -3 -2 -1 0 1at 1057.624 kb on + strand, within recAat 1057.696 kb on - strand, within recAat 1057.751 kb on - strand, within recAat 1057.809 kb on + strand, within recAat 1057.857 kb on - strand, within recAat 1060.991 kb on - strandat 1061.067 kb on + strandat 1061.693 kb on - strand, within DvMF_0878

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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1,057,624 + recA DvMF_0876 0.64 -2.8
1,057,696 - recA DvMF_0876 0.71 -3.3
1,057,751 - recA DvMF_0876 0.76 -2.5
1,057,809 + recA DvMF_0876 0.81 -3.3
1,057,857 - recA DvMF_0876 0.86 -0.7
1,060,991 - -2.0
1,061,067 + -1.0
1,061,693 - DvMF_0878 0.39 -1.1

Or see this region's nucleotide sequence