Experiment: MoYLS4 with Lomefloxacin 0.00156 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0641 and DvMF_0642 are separated by 137 nucleotides DvMF_0642 and DvMF_0643 are separated by 604 nucleotides
DvMF_0641: DvMF_0641 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding (RefSeq), at 766,428 to 769,145
_0641
DvMF_0642: DvMF_0642 - molybdopterin binding domain protein (RefSeq), at 769,283 to 770,326
_0642
DvMF_0643: DvMF_0643 - formate dehydrogenase, alpha subunit (RefSeq), at 770,931 to 773,969
_0643
Position (kb) 769
770
771 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 768.315 kb on + strand, within DvMF_0641 at 768.346 kb on - strand, within DvMF_0641 at 768.355 kb on - strand, within DvMF_0641 at 768.407 kb on - strand, within DvMF_0641 at 768.466 kb on - strand, within DvMF_0641 at 768.504 kb on - strand, within DvMF_0641 at 768.520 kb on - strand, within DvMF_0641 at 768.683 kb on + strand, within DvMF_0641 at 768.691 kb on - strand, within DvMF_0641 at 768.778 kb on - strand, within DvMF_0641 at 768.895 kb on - strand at 769.233 kb on - strand at 769.743 kb on + strand, within DvMF_0642 at 769.907 kb on + strand, within DvMF_0642 at 770.109 kb on + strand, within DvMF_0642 at 770.206 kb on - strand, within DvMF_0642 at 770.206 kb on - strand, within DvMF_0642 at 770.479 kb on + strand at 770.789 kb on + strand at 770.995 kb on - strand at 771.005 kb on - strand at 771.079 kb on - strand at 771.223 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM remove 768,315 + DvMF_0641 0.69 -2.6 768,346 - DvMF_0641 0.71 -3.7 768,355 - DvMF_0641 0.71 -0.0 768,407 - DvMF_0641 0.73 -1.3 768,466 - DvMF_0641 0.75 -1.1 768,504 - DvMF_0641 0.76 +0.7 768,520 - DvMF_0641 0.77 -0.9 768,683 + DvMF_0641 0.83 -1.5 768,691 - DvMF_0641 0.83 -1.7 768,778 - DvMF_0641 0.86 -4.2 768,895 - -1.1 769,233 - -2.2 769,743 + DvMF_0642 0.44 -0.8 769,907 + DvMF_0642 0.60 +1.0 770,109 + DvMF_0642 0.79 -0.7 770,206 - DvMF_0642 0.88 -1.9 770,206 - DvMF_0642 0.88 -0.4 770,479 + +0.0 770,789 + -0.9 770,995 - -1.0 771,005 - -3.4 771,079 - +0.2 771,223 - -1.4
Or see this region's nucleotide sequence