Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0599

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0598 and DvMF_0599 are separated by 282 nucleotidesDvMF_0599 and DvMF_0600 are separated by 496 nucleotides DvMF_0598: DvMF_0598 - phosphonate ABC transporter, periplasmic phosphonate-binding protein (RefSeq), at 709,435 to 710,490 _0598 DvMF_0599: DvMF_0599 - HAD-superfamily hydrolase, subfamily IIA (RefSeq), at 710,773 to 711,540 _0599 DvMF_0600: DvMF_0600 - degV family protein (RefSeq), at 712,037 to 714,088 _0600 Position (kb) 710 711 712Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 709.874 kb on + strand, within DvMF_0598at 710.185 kb on + strand, within DvMF_0598at 710.315 kb on + strand, within DvMF_0598at 710.750 kb on + strandat 710.903 kb on + strand, within DvMF_0599at 710.975 kb on + strand, within DvMF_0599at 710.983 kb on - strand, within DvMF_0599at 710.983 kb on - strand, within DvMF_0599at 711.111 kb on + strand, within DvMF_0599at 711.471 kb on - strandat 711.631 kb on - strandat 711.827 kb on + strandat 712.078 kb on - strandat 712.165 kb on + strandat 712.171 kb on + strandat 712.418 kb on - strand, within DvMF_0600

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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709,874 + DvMF_0598 0.42 -2.1
710,185 + DvMF_0598 0.71 -4.0
710,315 + DvMF_0598 0.83 -2.3
710,750 + -4.5
710,903 + DvMF_0599 0.17 -0.7
710,975 + DvMF_0599 0.26 -0.9
710,983 - DvMF_0599 0.27 -3.4
710,983 - DvMF_0599 0.27 -3.0
711,111 + DvMF_0599 0.44 -2.4
711,471 - -0.9
711,631 - -1.5
711,827 + -2.7
712,078 - -0.9
712,165 + +0.5
712,171 + -2.4
712,418 - DvMF_0600 0.19 -3.1

Or see this region's nucleotide sequence