Experiment: MoYLS4 with Lomefloxacin 0.00156 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0509 and DvMF_0510 are separated by 162 nucleotides DvMF_0510 and DvMF_0511 are separated by 146 nucleotides DvMF_0511 and DvMF_0512 are separated by 358 nucleotides
DvMF_0509: DvMF_0509 - diguanylate cyclase (RefSeq), at 599,259 to 600,755
_0509
DvMF_0510: DvMF_0510 - C_GCAxxG_C_C family protein (RefSeq), at 600,918 to 601,412
_0510
DvMF_0511: DvMF_0511 - transcriptional regulator, LysR family (RefSeq), at 601,559 to 603,658
_0511
DvMF_0512: DvMF_0512 - conserved integral membrane protein (RefSeq), at 604,017 to 604,727
_0512
Position (kb) 601
602
603
604 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 600.594 kb on + strand, within DvMF_0509 at 600.641 kb on - strand at 600.848 kb on + strand at 600.866 kb on - strand at 600.893 kb on + strand at 600.911 kb on + strand at 600.924 kb on - strand at 601.227 kb on + strand, within DvMF_0510 at 601.267 kb on - strand, within DvMF_0510 at 601.574 kb on + strand at 601.582 kb on - strand at 601.794 kb on + strand, within DvMF_0511 at 602.034 kb on + strand, within DvMF_0511 at 602.121 kb on + strand, within DvMF_0511 at 602.135 kb on - strand, within DvMF_0511 at 602.135 kb on - strand, within DvMF_0511 at 602.139 kb on - strand, within DvMF_0511 at 602.146 kb on + strand, within DvMF_0511 at 602.154 kb on - strand, within DvMF_0511 at 602.180 kb on - strand, within DvMF_0511 at 602.329 kb on + strand, within DvMF_0511 at 602.329 kb on + strand, within DvMF_0511 at 602.432 kb on + strand, within DvMF_0511 at 602.458 kb on + strand, within DvMF_0511 at 602.500 kb on - strand, within DvMF_0511 at 602.594 kb on + strand, within DvMF_0511 at 602.796 kb on - strand, within DvMF_0511 at 602.953 kb on - strand, within DvMF_0511 at 603.006 kb on - strand, within DvMF_0511 at 603.207 kb on - strand, within DvMF_0511 at 603.207 kb on - strand, within DvMF_0511 at 603.238 kb on + strand, within DvMF_0511 at 603.257 kb on + strand, within DvMF_0511 at 603.265 kb on - strand, within DvMF_0511 at 603.330 kb on + strand, within DvMF_0511 at 603.330 kb on + strand, within DvMF_0511 at 603.337 kb on - strand, within DvMF_0511 at 603.388 kb on - strand, within DvMF_0511 at 603.422 kb on - strand, within DvMF_0511 at 603.438 kb on + strand, within DvMF_0511 at 604.071 kb on - strand at 604.123 kb on + strand, within DvMF_0512 at 604.333 kb on - strand, within DvMF_0512 at 604.356 kb on - strand, within DvMF_0512 at 604.467 kb on - strand, within DvMF_0512 at 604.486 kb on + strand, within DvMF_0512 at 604.513 kb on - strand, within DvMF_0512 at 604.567 kb on + strand, within DvMF_0512 at 604.614 kb on - strand, within DvMF_0512
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM remove 600,594 + DvMF_0509 0.89 -2.6 600,641 - -1.2 600,848 + +0.4 600,866 - -2.7 600,893 + -0.9 600,911 + -1.2 600,924 - -0.8 601,227 + DvMF_0510 0.62 -0.8 601,267 - DvMF_0510 0.71 -2.0 601,574 + -1.9 601,582 - -0.7 601,794 + DvMF_0511 0.11 -0.3 602,034 + DvMF_0511 0.23 +0.0 602,121 + DvMF_0511 0.27 -0.7 602,135 - DvMF_0511 0.27 -0.6 602,135 - DvMF_0511 0.27 -1.0 602,139 - DvMF_0511 0.28 -0.2 602,146 + DvMF_0511 0.28 -1.4 602,154 - DvMF_0511 0.28 -0.6 602,180 - DvMF_0511 0.30 -3.6 602,329 + DvMF_0511 0.37 -1.8 602,329 + DvMF_0511 0.37 -3.2 602,432 + DvMF_0511 0.42 -1.1 602,458 + DvMF_0511 0.43 +0.1 602,500 - DvMF_0511 0.45 -2.0 602,594 + DvMF_0511 0.49 -1.7 602,796 - DvMF_0511 0.59 -1.0 602,953 - DvMF_0511 0.66 +2.1 603,006 - DvMF_0511 0.69 -1.5 603,207 - DvMF_0511 0.78 -2.0 603,207 - DvMF_0511 0.78 -0.9 603,238 + DvMF_0511 0.80 -0.0 603,257 + DvMF_0511 0.81 -1.0 603,265 - DvMF_0511 0.81 -0.2 603,330 + DvMF_0511 0.84 -0.2 603,330 + DvMF_0511 0.84 -1.1 603,337 - DvMF_0511 0.85 -4.1 603,388 - DvMF_0511 0.87 -2.7 603,422 - DvMF_0511 0.89 -0.5 603,438 + DvMF_0511 0.89 -1.4 604,071 - -1.2 604,123 + DvMF_0512 0.15 -2.4 604,333 - DvMF_0512 0.44 -0.6 604,356 - DvMF_0512 0.48 -1.5 604,467 - DvMF_0512 0.63 -3.9 604,486 + DvMF_0512 0.66 -2.6 604,513 - DvMF_0512 0.70 -0.8 604,567 + DvMF_0512 0.77 -1.7 604,614 - DvMF_0512 0.84 -2.3
Or see this region's nucleotide sequence