Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0435

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0434 and DvMF_0435 are separated by 286 nucleotidesDvMF_0435 and DvMF_0436 are separated by 241 nucleotidesDvMF_0436 and DvMF_0437 are separated by 260 nucleotides DvMF_0434: DvMF_0434 - Phosphoribosylformylglycinamidine synthase (RefSeq), at 509,259 to 510,068 _0434 DvMF_0435: DvMF_0435 - hypothetical protein (RefSeq), at 510,355 to 510,753 _0435 DvMF_0436: DvMF_0436 - hypothetical protein (RefSeq), at 510,995 to 511,432 _0436 DvMF_0437: DvMF_0437 - magnesium-translocating P-type ATPase (RefSeq), at 511,693 to 514,335 _0437 Position (kb) 510 511Strain fitness (log2 ratio) -2 -1 0 1at 509.395 kb on + strand, within DvMF_0434at 509.596 kb on - strand, within DvMF_0434at 509.689 kb on + strand, within DvMF_0434at 509.973 kb on - strand, within DvMF_0434at 510.480 kb on + strand, within DvMF_0435at 510.820 kb on - strandat 511.159 kb on - strand, within DvMF_0436at 511.274 kb on + strand, within DvMF_0436at 511.412 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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509,395 + DvMF_0434 0.17 -2.2
509,596 - DvMF_0434 0.42 +0.1
509,689 + DvMF_0434 0.53 +0.5
509,973 - DvMF_0434 0.88 +1.6
510,480 + DvMF_0435 0.31 -2.3
510,820 - -0.1
511,159 - DvMF_0436 0.37 -1.1
511,274 + DvMF_0436 0.64 -0.7
511,412 - -2.4

Or see this region's nucleotide sequence