Experiment: MoYLS4 with Lomefloxacin 0.00156 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0329 and DvMF_0330 are separated by 273 nucleotides DvMF_0330 and DvMF_0331 are separated by 1 nucleotides
DvMF_0329: DvMF_0329 - hypothetical protein (RefSeq), at 383,521 to 384,408
_0329
DvMF_0330: DvMF_0330 - iron-containing alcohol dehydrogenase (RefSeq), at 384,682 to 385,824
_0330
DvMF_0331: DvMF_0331 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 385,826 to 387,151
_0331
Position (kb)
384
385
386 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 384.053 kb on + strand, within DvMF_0329 at 384.061 kb on - strand, within DvMF_0329 at 384.061 kb on - strand, within DvMF_0329 at 384.159 kb on + strand, within DvMF_0329 at 384.209 kb on + strand, within DvMF_0329 at 384.360 kb on - strand at 384.363 kb on - strand at 384.411 kb on + strand at 384.465 kb on - strand at 384.496 kb on + strand at 384.656 kb on + strand at 384.656 kb on + strand at 384.781 kb on + strand at 384.799 kb on + strand, within DvMF_0330 at 384.930 kb on - strand, within DvMF_0330 at 384.949 kb on - strand, within DvMF_0330 at 385.416 kb on - strand, within DvMF_0330 at 385.498 kb on + strand, within DvMF_0330 at 385.508 kb on + strand, within DvMF_0330 at 385.635 kb on + strand, within DvMF_0330 at 385.823 kb on - strand at 386.104 kb on + strand, within DvMF_0331 at 386.495 kb on - strand, within DvMF_0331 at 386.600 kb on - strand, within DvMF_0331 at 386.606 kb on - strand, within DvMF_0331 at 386.606 kb on - strand, within DvMF_0331 at 386.618 kb on + strand, within DvMF_0331 at 386.663 kb on - strand, within DvMF_0331 at 386.689 kb on + strand, within DvMF_0331 at 386.773 kb on + strand, within DvMF_0331 at 386.785 kb on + strand, within DvMF_0331 at 386.788 kb on - strand, within DvMF_0331 at 386.822 kb on - strand, within DvMF_0331
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM remove 384,053 + DvMF_0329 0.60 +1.3 384,061 - DvMF_0329 0.61 -0.3 384,061 - DvMF_0329 0.61 -2.2 384,159 + DvMF_0329 0.72 -1.2 384,209 + DvMF_0329 0.77 -1.2 384,360 - -4.6 384,363 - -0.5 384,411 + -1.5 384,465 - -1.5 384,496 + -2.0 384,656 + -1.6 384,656 + -0.5 384,781 + -0.3 384,799 + DvMF_0330 0.10 -1.5 384,930 - DvMF_0330 0.22 -0.7 384,949 - DvMF_0330 0.23 -1.6 385,416 - DvMF_0330 0.64 -0.2 385,498 + DvMF_0330 0.71 -1.2 385,508 + DvMF_0330 0.72 -2.0 385,635 + DvMF_0330 0.83 -1.4 385,823 - -3.8 386,104 + DvMF_0331 0.21 -3.8 386,495 - DvMF_0331 0.50 -2.4 386,600 - DvMF_0331 0.58 -0.5 386,606 - DvMF_0331 0.59 -1.1 386,606 - DvMF_0331 0.59 -3.8 386,618 + DvMF_0331 0.60 +0.5 386,663 - DvMF_0331 0.63 -3.0 386,689 + DvMF_0331 0.65 -1.4 386,773 + DvMF_0331 0.71 -2.5 386,785 + DvMF_0331 0.72 -1.8 386,788 - DvMF_0331 0.73 -2.2 386,822 - DvMF_0331 0.75 -0.3
Or see this region's nucleotide sequence