Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0317

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0316 and DvMF_0317 are separated by 20 nucleotidesDvMF_0317 and DvMF_0318 overlap by 4 nucleotides DvMF_0316: DvMF_0316 - putative signal transduction protein with CBS domains (RefSeq), at 365,954 to 367,684 _0316 DvMF_0317: DvMF_0317 - putative signal transduction protein with CBS domains (RefSeq), at 367,705 to 369,897 _0317 DvMF_0318: DvMF_0318 - Exonuclease RNase T and DNA polymerase III (RefSeq), at 369,894 to 370,697 _0318 Position (kb) 367 368 369 370Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 366.981 kb on + strand, within DvMF_0316at 366.989 kb on - strand, within DvMF_0316at 367.173 kb on - strand, within DvMF_0316at 367.266 kb on - strand, within DvMF_0316at 367.528 kb on + strandat 367.537 kb on + strandat 367.853 kb on - strandat 367.853 kb on - strandat 367.954 kb on + strand, within DvMF_0317at 367.962 kb on - strand, within DvMF_0317at 367.968 kb on + strand, within DvMF_0317at 367.977 kb on + strand, within DvMF_0317at 367.985 kb on - strand, within DvMF_0317at 368.047 kb on - strand, within DvMF_0317at 368.052 kb on + strand, within DvMF_0317at 368.102 kb on - strand, within DvMF_0317at 368.107 kb on - strand, within DvMF_0317at 368.183 kb on - strand, within DvMF_0317at 368.300 kb on + strand, within DvMF_0317at 368.300 kb on - strand, within DvMF_0317at 368.308 kb on - strand, within DvMF_0317at 368.397 kb on - strand, within DvMF_0317at 368.465 kb on - strand, within DvMF_0317at 368.495 kb on - strand, within DvMF_0317at 368.553 kb on + strand, within DvMF_0317at 368.640 kb on + strand, within DvMF_0317at 368.648 kb on - strand, within DvMF_0317at 368.774 kb on - strand, within DvMF_0317at 369.065 kb on + strand, within DvMF_0317at 369.182 kb on + strand, within DvMF_0317at 369.258 kb on - strand, within DvMF_0317at 369.258 kb on - strand, within DvMF_0317at 369.278 kb on - strand, within DvMF_0317at 369.282 kb on - strand, within DvMF_0317at 369.352 kb on + strand, within DvMF_0317at 369.563 kb on - strand, within DvMF_0317at 369.972 kb on + strandat 370.002 kb on - strand, within DvMF_0318at 370.109 kb on + strand, within DvMF_0318at 370.109 kb on + strand, within DvMF_0318at 370.117 kb on - strand, within DvMF_0318at 370.117 kb on - strand, within DvMF_0318at 370.283 kb on - strand, within DvMF_0318at 370.288 kb on - strand, within DvMF_0318at 370.369 kb on - strand, within DvMF_0318at 370.376 kb on + strand, within DvMF_0318at 370.509 kb on - strand, within DvMF_0318at 370.513 kb on + strand, within DvMF_0318at 370.559 kb on - strand, within DvMF_0318at 370.637 kb on - strandat 370.796 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
remove
366,981 + DvMF_0316 0.59 -0.9
366,989 - DvMF_0316 0.60 -3.1
367,173 - DvMF_0316 0.70 -2.0
367,266 - DvMF_0316 0.76 -2.3
367,528 + -0.0
367,537 + +0.8
367,853 - -0.8
367,853 - -3.6
367,954 + DvMF_0317 0.11 -2.7
367,962 - DvMF_0317 0.12 -0.7
367,968 + DvMF_0317 0.12 +0.1
367,977 + DvMF_0317 0.12 -1.0
367,985 - DvMF_0317 0.13 -2.0
368,047 - DvMF_0317 0.16 -0.9
368,052 + DvMF_0317 0.16 -2.7
368,102 - DvMF_0317 0.18 -1.1
368,107 - DvMF_0317 0.18 -0.7
368,183 - DvMF_0317 0.22 -1.2
368,300 + DvMF_0317 0.27 -0.2
368,300 - DvMF_0317 0.27 -2.2
368,308 - DvMF_0317 0.27 -2.1
368,397 - DvMF_0317 0.32 -1.6
368,465 - DvMF_0317 0.35 -0.5
368,495 - DvMF_0317 0.36 -2.0
368,553 + DvMF_0317 0.39 -0.6
368,640 + DvMF_0317 0.43 -1.6
368,648 - DvMF_0317 0.43 -0.8
368,774 - DvMF_0317 0.49 -1.3
369,065 + DvMF_0317 0.62 -3.7
369,182 + DvMF_0317 0.67 -1.2
369,258 - DvMF_0317 0.71 -0.7
369,258 - DvMF_0317 0.71 -3.8
369,278 - DvMF_0317 0.72 -1.5
369,282 - DvMF_0317 0.72 +0.2
369,352 + DvMF_0317 0.75 -0.2
369,563 - DvMF_0317 0.85 -1.3
369,972 + -1.4
370,002 - DvMF_0318 0.13 -2.0
370,109 + DvMF_0318 0.27 -1.8
370,109 + DvMF_0318 0.27 -1.6
370,117 - DvMF_0318 0.28 +1.6
370,117 - DvMF_0318 0.28 -3.6
370,283 - DvMF_0318 0.48 -1.4
370,288 - DvMF_0318 0.49 -0.3
370,369 - DvMF_0318 0.59 -0.3
370,376 + DvMF_0318 0.60 -1.0
370,509 - DvMF_0318 0.76 -0.4
370,513 + DvMF_0318 0.77 -1.2
370,559 - DvMF_0318 0.83 -0.8
370,637 - -1.7
370,796 - -2.8

Or see this region's nucleotide sequence