Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0267

Experiment: MoYLS4 with Lomefloxacin 0.00156 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntileS and DvMF_0267 are separated by 365 nucleotidesDvMF_0267 and DvMF_0268 are separated by 147 nucleotidesDvMF_0268 and DvMF_0269 are separated by 62 nucleotides DvMF_0266: ileS - isoleucyl-tRNA synthetase (RefSeq), at 302,686 to 305,502 ileS DvMF_0267: DvMF_0267 - lipolytic protein G-D-S-L family (RefSeq), at 305,868 to 306,515 _0267 DvMF_0268: DvMF_0268 - hydrogenase assembly chaperone hypC/hupF (RefSeq), at 306,663 to 306,914 _0268 DvMF_0269: DvMF_0269 - hydrogenase expression/formation protein (RefSeq), at 306,977 to 307,483 _0269 Position (kb) 305 306 307Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 305.981 kb on + strand, within DvMF_0267at 306.135 kb on - strand, within DvMF_0267at 306.466 kb on - strandat 306.507 kb on - strandat 306.653 kb on - strandat 306.758 kb on - strand, within DvMF_0268at 307.252 kb on + strand, within DvMF_0269at 307.318 kb on - strand, within DvMF_0269at 307.318 kb on - strand, within DvMF_0269at 307.380 kb on + strand, within DvMF_0269at 307.431 kb on + strand, within DvMF_0269at 307.499 kb on - strandat 307.502 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM
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305,981 + DvMF_0267 0.17 -1.3
306,135 - DvMF_0267 0.41 -2.5
306,466 - -1.3
306,507 - -2.1
306,653 - -0.5
306,758 - DvMF_0268 0.38 +3.2
307,252 + DvMF_0269 0.54 -1.2
307,318 - DvMF_0269 0.67 -0.6
307,318 - DvMF_0269 0.67 -0.5
307,380 + DvMF_0269 0.79 -4.2
307,431 + DvMF_0269 0.90 -2.3
307,499 - +0.0
307,502 - -0.2

Or see this region's nucleotide sequence