Experiment: MoYLS4 with Lomefloxacin 0.00156 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0203 and DvMF_0204 are separated by 156 nucleotides DvMF_0204 and DvMF_0205 are separated by 39 nucleotides DvMF_0205 and DvMF_0206 are separated by 85 nucleotides
DvMF_0203: DvMF_0203 - Radical SAM domain protein (RefSeq), at 221,147 to 222,682
_0203
DvMF_0204: DvMF_0204 - hypothetical protein (RefSeq), at 222,839 to 223,672
_0204
DvMF_0205: DvMF_0205 - hypothetical protein (RefSeq), at 223,712 to 224,239
_0205
DvMF_0206: DvMF_0206 - hypothetical protein (RefSeq), at 224,325 to 225,326
_0206
Position (kb) 222
223
224 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 222.029 kb on + strand, within DvMF_0203 at 222.148 kb on + strand, within DvMF_0203 at 222.264 kb on - strand, within DvMF_0203 at 222.279 kb on + strand, within DvMF_0203 at 222.287 kb on - strand, within DvMF_0203 at 222.332 kb on - strand, within DvMF_0203 at 222.384 kb on - strand, within DvMF_0203 at 222.504 kb on - strand, within DvMF_0203 at 222.860 kb on + strand at 222.877 kb on + strand at 222.932 kb on - strand, within DvMF_0204 at 222.970 kb on + strand, within DvMF_0204 at 222.970 kb on + strand, within DvMF_0204 at 222.995 kb on - strand, within DvMF_0204 at 223.298 kb on - strand, within DvMF_0204 at 223.346 kb on + strand, within DvMF_0204 at 223.371 kb on + strand, within DvMF_0204 at 223.448 kb on + strand, within DvMF_0204 at 223.556 kb on + strand, within DvMF_0204 at 223.767 kb on - strand, within DvMF_0205 at 224.064 kb on - strand, within DvMF_0205
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Lomefloxacin 0.00156 mM remove 222,029 + DvMF_0203 0.57 -3.5 222,148 + DvMF_0203 0.65 -0.3 222,264 - DvMF_0203 0.73 -1.8 222,279 + DvMF_0203 0.74 +0.3 222,287 - DvMF_0203 0.74 -2.8 222,332 - DvMF_0203 0.77 -3.4 222,384 - DvMF_0203 0.81 -1.8 222,504 - DvMF_0203 0.88 -0.1 222,860 + -0.2 222,877 + -1.8 222,932 - DvMF_0204 0.11 -3.8 222,970 + DvMF_0204 0.16 -1.9 222,970 + DvMF_0204 0.16 -1.4 222,995 - DvMF_0204 0.19 +0.5 223,298 - DvMF_0204 0.55 -3.4 223,346 + DvMF_0204 0.61 -1.2 223,371 + DvMF_0204 0.64 -1.5 223,448 + DvMF_0204 0.73 -2.3 223,556 + DvMF_0204 0.86 -0.6 223,767 - DvMF_0205 0.10 -0.4 224,064 - DvMF_0205 0.67 -0.9
Or see this region's nucleotide sequence